RetrogeneDB ID: | retro_mmus_2466 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:59368305..59368864(-) | ||
Located in intron of: | ENSMUSG00000038578 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083979 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Zmynd19 | ||
Ensembl ID: | ENSMUSG00000026974 | ||
Aliases: | None | ||
Description: | zinc finger, MYND domain containing 19 [Source:MGI Symbol;Acc:MGI:1914437] |
Percent Identity: | 84.29 % |
Parental protein coverage: | 83.7 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ARMEVDADGNGAKIFAYAFDKNRGRGSGRLLHELLWERHRGGVAPGFQVVHLNAVTVDNRLDNLQLVPWG |
ARMEVDADGNGAKIFAYAFDKNRG.GSGRLLHELLW..HRGGVAPGFQVV.LNAVTVDN.LDNL.LVPWG | |
Retrocopy | ARMEVDADGNGAKIFAYAFDKNRGKGSGRLLHELLWDWHRGGVAPGFQVVYLNAVTVDNHLDNLPLVPWG |
Parental | WR-PKAEETSSKQREQSLYWLAIQQLPTDPIEEQFPVLNVTRYYNANGDVVEEEENSCTYYECHYPPCTV |
WR.PK......K....SLYWLAIQQLPTDPIEE.FPVLNVT.YYNANGDVVEEEENSCTYYECH.PPC.V | |
Retrocopy | WR>PKLKRPPAK----SLYWLAIQQLPTDPIEEHFPVLNVTQYYNANGDVVEEEENSCTYYECHSPPCMV |
Parental | IEKQLREFNICGRCQVARYCGSQCQQKDWPAHKKHCRERKRPFQHELEPER |
IEKQL.EFNICG.C.VA.YCG.QCQQKD.P.HKKHCRERK.PFQH.LEPER | |
Retrocopy | IEKQL*EFNICGGCPVA*YCGFQCQQKDRPGHKKHCRERKCPFQHKLEPER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 21 .56 RPM |
SRP007412_cerebellum | 0 .00 RPM | 20 .10 RPM |
SRP007412_heart | 0 .03 RPM | 12 .79 RPM |
SRP007412_kidney | 0 .04 RPM | 10 .30 RPM |
SRP007412_liver | 0 .00 RPM | 11 .41 RPM |
SRP007412_testis | 0 .00 RPM | 44 .37 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000006644 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000008360 | 1 retrocopy | |
Equus caballus | ENSECAG00000012412 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005023 | 1 retrocopy | |
Homo sapiens | ENSG00000165724 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006875 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011727 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019610 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017172 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026974 | 3 retrocopies |
retro_mmus_1433, retro_mmus_2466 , retro_mmus_942,
|
Nomascus leucogenys | ENSNLEG00000009236 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010812 | 1 retrocopy |