RetrogeneDB ID: | retro_dnov_1611 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_2470:79787..80244(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000001179 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C12orf43 | ||
Ensembl ID: | ENSDNOG00000000382 | ||
Aliases: | None | ||
Description: | chromosome 12 open reading frame 43 [Source:HGNC Symbol;Acc:25719] |
Percent Identity: | 78.85 % |
Parental protein coverage: | 58.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | AEVQKAHSEDDGFRLFFTSIPEA-EKEASPQPCRKRLPSSSS-DNSD-EEWKRCQEAA-VSASDILQESA |
..VQKAHSED.GF..FFTSIPE..EKEASPQ.CRKRLPSSSS.D.SD.E.WK.CQEAA...ASDILQ.S. | |
Retrocopy | SKVQKAHSEDGGFCIFFTSIPEGPEKEASPQSCRKRLPSSSSSDDSD>EGWK-CQEAA<LAASDILQQSV |
Parental | IHGPVKVIKEEKKQKKKAKKEASTTSATATTATGRVQEQEKEATKLNGDQTSLGIKKKKRKKKV-KKDSE |
IHG.VKVIKEEK.QKK.AK.EAS..SATATTATGRVQEQEKEA.KLNG.QTSLGIKKKKRKKK..KKDSE | |
Retrocopy | IHGAVKVIKEEKRQKKEAKREASAASATATTATGRVQEQEKEAAKLNGHQTSLGIKKKKRKKKA>KKDSE |
Parental | ASAFPRAKTAAAVPVN |
A..F.RAK.AAA.PVN | |
Retrocopy | AAPFSRAKSAAAMPVN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 4 .28 RPM |
SRP012922_cerebellum | 0 .00 RPM | 9 .21 RPM |
SRP012922_heart | 0 .00 RPM | 2 .55 RPM |
SRP012922_kidney | 0 .00 RPM | 4 .93 RPM |
SRP012922_liver | 0 .00 RPM | 2 .48 RPM |
SRP012922_lung | 0 .00 RPM | 3 .36 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 1 .04 RPM |
SRP012922_spleen | 0 .00 RPM | 4 .92 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000000382 | 1 retrocopy |
retro_dnov_1611 ,
|
Microcebus murinus | ENSMICG00000008728 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000009317 | 2 retrocopies |