>retro_tsyr_2056
ATGGCGGCGTTCAAGGGCGCAGTGAGCGATTGAGAAAGCAGTAGCAGCAGCAGCGATGGGGGAGAAGCTGGCACGGTGCC
GGGAAGCGGCGATGCCGGCCTGGGACTTGAAGAAGGGCCCACAGGGGTCAGAGAAACCAAGAAGCGGTGCTGCAAATAAC
CAGTTGCCAACCTCCCAGCCAAGCCTCAGGCACAAGGTGGATGAGCACGAACGAGAGGGCAATGAGCTTCAGACCACCCC
TGAGTTCCGAGCCCACGTAGCCAAGAAGCTGGGAACCCTACTGGACAGCTTCATTACCATCTCCGAAGTAGCAAAAGAGC
CAGCAAAAACTGAAGTACAGAAAGTCACCTCAGAGGATGACGGCTTCCGCCTTTTCTTCACGTCCATTCCTGGAGGCCCT
GAGAAGGAAACTTCTCCCCCGCCCTGCTGCAAGCGACAACCTTCCAGCTCCAGCAGCAGCGAGGACAGTGACGAGGAGTG
GCAGAGGTGCTGGGAGGCAGCTGTGTCAGTATCCGACATCCTCTGGGAGTCAGCCATCCACAGTCCTGTCAGGGAGGAGA
AGGAGGCAAGAAAGAAAAGAAAGTTGAAAAAGAAAGCCAAGAAGGCGGGCAGCGTCGACTCGGTTGTAACCACCACTGTC
ACTACCAATGGTGCTGGGGTCCAGAAGCAGGAGGAGTCAGGCAAGCCCAATGGGGACCAGATGCTGTTTGGGACCAAAAA
GAAAAAAAGAAAGGAAAAGGCCAAGAAGGCCAGTGAGGCATCTCTGTTCCCACCAACAAAGAGCGCCGCAGCTGTACCTG
CAAAC
ORF - retro_tsyr_2056 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
76.58 % |
Parental protein coverage: |
99.62 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MAVFSGAVRDSENGSSGSDG-EELARSQEVAIPSWDLKKGLQGPEKPRSGAANNQLRASQPSLRHKVDEH |
| MA.F.GAV.D.E..SS.SDG.E.LAR..E.A.P.WDLKKG.QG.EKPRSGAANNQL..SQPSLRHKVDEH |
Retrocopy | MAAFKGAVSD*ESSSSSSDG>EKLARCREAAMPAWDLKKGPQGSEKPRSGAANNQLPTSQPSLRHKVDEH |
|
Parental | EQDANELQTTLEFR-HVAK-LGALLDSFITISEVAKEPAKTEVQKVASEDDGFRLFFTSIPGGPEKEASP |
| E...NELQTT.EFR.HVAK.LG.LLDSFITISEVAKEPAKTEVQKV.SEDDGFRLFFTSIPGGPEKE.SP |
Retrocopy | EREGNELQTTPEFRAHVAKKLGTLLDSFITISEVAKEPAKTEVQKVTSEDDGFRLFFTSIPGGPEKETSP |
|
Parental | P-CHRRQPSTSSS-EHSDEEWQRCWEAAVSVSDILWESAIHSPVREEKEARKKRKSEKKAKKAASVHSAV |
| P.C..RQPS.SSS.E.SDEEWQRCWEAAVSVSDILWESAIHSPVRE..................SV.S.V |
Retrocopy | PPCCKRQPSSSSSSEDSDEEWQRCWEAAVSVSDILWESAIHSPVREXXXXXXXXXXXXXXXXXGSVDSVV |
|
Parental | TTTVTTNGAMVQKQEESGKPNGDQMLFGTKKKKRKEKAKKASEASLFPPAKSAAAVPAN |
| TTTVTTNGA.VQKQEESGKPNGDQMLFGT........AKKASEASLFPP.KSAAAVPAN |
Retrocopy | TTTVTTNGAGVQKQEESGKPNGDQMLFGTXXXXXXXXAKKASEASLFPPTKSAAAVPAN |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_2056 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
5 retrocopies.