>retro_tsyr_257
ATGGTGGCGCTCAATGGTGCCACGAGCGATTCAGAAAGCAGTAGCGGCAGCAGGGATGGGGAGGAGCTGGCATGGTGCTG
GGGAAGCGGCAATGCCAGACTGGGACTTGAAGAAGCACCTGCAGAGACCAGAGAAACCAAAAAGTGGTGCTGCGAATAAC
CAGTTGCCAACCTCCCAGCCAAGCCTCAGGCACAAGGTGGATGAGCACGAACAAGATGGCAACGAGCTACAGACCACCCT
TGAGTTCCAAGCCCACGTAGCCAAGAAGCTAGGAGCCCTACTGGACAGCTTCATTACCGTCTCGAAGTAGCAAAGGAGCC
AGCAAAAGCTGAAGTTCAGAAAATCGCCTCAGAGGATGATGGCTTACACCTTTTCTTCACGTCCATTCCTGGAGTCCCTG
AGAAGGAAGCTTCTCCCCAACCCTGCTGCAGGCGACAGCCTTTTACCTCCAGCAGCAGCGAGGACAGTGACGAGGAGTGG
CAGCGGTGCTGGGAGGCAGCTGTGTCAGTATCCGACATCCTCCAGGAGTCAGCCATCCACAGCCCTGTCAGGAAGGAGAA
GGAGACAAGAAAGAAAAGGAAGTGGAAAAAGGAAGCCAAGAAGGTGGCCAGTGTCGACTTGGCTATAACCACCACTATCA
CCACCAATGGAGCTATGGTCCAGAAGCAGGAGAAGGAATCAGGCAAGCCCAACGGGGACCGGCTGCTGCTTGGGACCAAA
AAGGAAAAAAAGAAAGAAAAAGGCCAAGAAGGCCAGCAAATCTTCTCTGTTTCCACCAGCAAAGAGTGCTACAGCTATGC
CTGCAAAC
ORF - retro_tsyr_257 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
73.53 % |
Parental protein coverage: |
99.62 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | MAVFSGAVRDSENGSSGSDGEELA-RSQEVAIPSWDLKKGLQGPEKPRSGAANNQLRASQPSLRHKVDEH |
| M....GA..DSE..S...DGEELA....E.A.P.WDLKK.LQ.PEKP.SGAANNQL..SQPSLRHKVDEH |
Retrocopy | MVALNGATSDSESSSGSRDGEELA>GAGEAAMPDWDLKKHLQRPEKPKSGAANNQLPTSQPSLRHKVDEH |
|
Parental | EQDANELQTTLEFR-HVAK-LGALLDSFITIS-EVAKEPAKTEVQKVASEDDGFRLFFTSIPGGPEKEAS |
| EQD.NELQTTLEF..HVAK.LGALLDSFIT.S.EVAKEPAK.EVQK.ASEDDG..LFFTSIPG.PEKEAS |
Retrocopy | EQDGNELQTTLEFQAHVAKKLGALLDSFITVS<EVAKEPAKAEVQKIASEDDGLHLFFTSIPGVPEKEAS |
|
Parental | P-PCHRRQPSTSSS-EHSDEEWQRCWEAAVSVSDILWESAIHSPVREEKEARKKRKSEKKAKKAASVHSA |
| P.PC.RRQP.TSSS.E.SDEEWQRCWEAAVSVSDIL.ESAIHSPVR.EKE.RKKRK..K.AKK.ASV..A |
Retrocopy | PQPCCRRQPFTSSSSEDSDEEWQRCWEAAVSVSDILQESAIHSPVRKEKETRKKRKWKKEAKKVASVDLA |
|
Parental | VTTTVTTNGAMVQKQE-ESGKPNGDQMLFGTKKKKRKEKAKKASE-ASLFPPAKSAAAVPAN |
| .TTT.TTNGAMVQKQE.ESGKPNGD..L.GT................SLFPPAKSA.A.PAN |
Retrocopy | ITTTITTNGAMVQKQEKESGKPNGDRLLLGTXXXXXXXXGQEGQQ>SSLFPPAKSATAMPAN |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_257 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
5 retrocopies.