RetrogeneDB ID: | retro_dnov_1859 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_33715:11727..12129(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFA12 | ||
Ensembl ID: | ENSDNOG00000009192 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 [Source:HGNC Symbol;Acc:23987] |
Percent Identity: | 79.1 % |
Parental protein coverage: | 92.41 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QQLSGHGGLRGYLRVFFRANDVRDGKLVGEDKYGNKFNEDNKQFFGRHRWVIYTTEMNGKNTFWDMDGSM |
QQLSGHGGLRGYL.VFFRANDVR.GKLVGEDKYGNK..EDNKQFFGRHRWVIYTTEMNG.NTFWDMDGSM | |
Retrocopy | QQLSGHGGLRGYL*VFFRANDVRVGKLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGTNTFWDMDGSM |
Parental | VPPEXXXXXXXXXXXXXXXXXXXAHKFIWANHKFNVSCTPEQYVPYSTTRKKIQEWVPPSTPCK |
VPPE...................A.KFIWANHKFNVS.T.EQYVPYSTTRKKIQE.VPPSTPCK | |
Retrocopy | VPPEWHRWLHCMTDDLPTTKPPTAPKFIWANHKFNVSGTREQYVPYSTTRKKIQERVPPSTPCK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 71 .37 RPM | 43 .37 RPM |
SRP012922_cerebellum | 33 .40 RPM | 14 .85 RPM |
SRP012922_heart | 91 .88 RPM | 46 .87 RPM |
SRP012922_kidney | 72 .28 RPM | 33 .40 RPM |
SRP012922_liver | 33 .13 RPM | 17 .65 RPM |
SRP012922_lung | 20 .92 RPM | 11 .00 RPM |
SRP012922_quadricep_muscle | 86 .20 RPM | 38 .94 RPM |
SRP012922_spleen | 23 .69 RPM | 12 .59 RPM |