RetrogeneDB ID: | retro_fcat_362 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:166341544..166341828(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFA12 | ||
Ensembl ID: | ENSFCAG00000023050 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 [Source:HGNC Symbol;Acc:23987] |
Percent Identity: | 52.43 % |
Parental protein coverage: | 67.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | RANDVRVGTLV-GE-DKYGNKYYEDNKQFFGRHRWV-IYTTEMNGKNTFWDVDGSMV-PPEWHRWLHSMT |
.A..VR.GT.V.GE.DK.GNKY.EDN.Q..GRHRWV.....E.N...TF.DVDG..V....WHR.L.... | |
Retrocopy | KAHGVRAGTWV<GE<DKHGNKYSEDNTQLSGRHRWV<MDAPERNAESTFGDVDGNVVXXXRWHRGLRAL- |
Parental | DDPPTTKPPIARKFIWTNHKFNVSGTPE-QYVP |
..P....PP..RK.IWTN..F.VSG.P...YVP | |
Retrocopy | -*PMAPQPP-NRKLIWTNRAFSVSGAPD<RYVP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 15 .72 RPM |
SRP017611_kidney | 0 .00 RPM | 50 .91 RPM |
SRP017611_liver | 0 .00 RPM | 16 .17 RPM |