RetrogeneDB ID: | retro_dnov_2574 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_86921:6249..6571(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000008981 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAA50 | ||
Ensembl ID: | ENSDNOG00000001027 | ||
Aliases: | None | ||
Description: | N(alpha)-acetyltransferase 50, NatE catalytic subunit [Source:HGNC Symbol;Acc:29533] |
Percent Identity: | 97.22 % |
Parental protein coverage: | 64.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVCCRVDHSQNQKRLYI |
RIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVG.LAKLAYFNDIAVGAVCCRVD.SQNQKRLYI | |
Retrocopy | RIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGGLAKLAYFNDIAVGAVCCRVDQSQNQKRLYI |
Parental | MTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFD-NIYL |
MTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFD.NIYL | |
Retrocopy | MTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFD>NIYL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 4 .86 RPM | 9 .92 RPM |
SRP012922_cerebellum | 2 .34 RPM | 6 .74 RPM |
SRP012922_heart | 4 .41 RPM | 5 .10 RPM |
SRP012922_kidney | 4 .11 RPM | 7 .12 RPM |
SRP012922_liver | 3 .72 RPM | 4 .80 RPM |
SRP012922_lung | 3 .67 RPM | 6 .57 RPM |
SRP012922_quadricep_muscle | 21 .64 RPM | 40 .50 RPM |
SRP012922_spleen | 3 .43 RPM | 8 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000001027 | 1 retrocopy |
retro_dnov_2574 ,
|
Homo sapiens | ENSG00000121579 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004624 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011197 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000009780 | 2 retrocopies | |
Sorex araneus | ENSSARG00000004134 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009438 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009849 | 3 retrocopies |