RetrogeneDB ID: | retro_hsap_874 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:55972804..55973100(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000213604 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAA50 | ||
Ensembl ID: | ENSG00000121579 | ||
Aliases: | NAA50, MAK3, NAT13, NAT13P, NAT5, NAT5P, SAN, hNAT5, hSAN | ||
Description: | N(alpha)-acetyltransferase 50, NatE catalytic subunit [Source:HGNC Symbol;Acc:29533] |
Percent Identity: | 78. % |
Parental protein coverage: | 58.58 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MKGSRIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEV-GELAKLAYFNDIAVGAVCCRVDHSQNQ |
MKGS..ELGD.TPHNIKQLKR.N.VIF.VSYN.KFYKDV.EV.GE..KLAYF.D..VGAV..RV.HSQNQ | |
Retrocopy | MKGSWMELGDGTPHNIKQLKRRNRVIFSVSYNGKFYKDVMEV<GERSKLAYFSDVPVGAVYSRVAHSQNQ |
Parental | KRLYIMTLGCLAPYRRLGIGTKMLNHVLNI |
KRLYIMTLG.LAPY.RLGIGT.ML.HVLN. | |
Retrocopy | KRLYIMTLGYLAPYQRLGIGTTMLIHVLNM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 161 .35 RPM |
bodymap2_adrenal | 0 .00 RPM | 116 .43 RPM |
bodymap2_brain | 0 .00 RPM | 101 .19 RPM |
bodymap2_breast | 0 .00 RPM | 176 .89 RPM |
bodymap2_colon | 0 .00 RPM | 154 .61 RPM |
bodymap2_heart | 0 .00 RPM | 76 .80 RPM |
bodymap2_kidney | 0 .00 RPM | 152 .81 RPM |
bodymap2_liver | 0 .00 RPM | 81 .60 RPM |
bodymap2_lung | 0 .00 RPM | 141 .58 RPM |
bodymap2_lymph_node | 0 .00 RPM | 121 .83 RPM |
bodymap2_ovary | 0 .00 RPM | 184 .44 RPM |
bodymap2_prostate | 0 .00 RPM | 126 .23 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 216 .36 RPM |
bodymap2_testis | 0 .00 RPM | 155 .63 RPM |
bodymap2_thyroid | 0 .00 RPM | 211 .25 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 170 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_3031 |
Gorilla gorilla | retro_ggor_710 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000001027 | 1 retrocopy | |
Homo sapiens | ENSG00000121579 | 1 retrocopy |
retro_hsap_874 ,
|
Nomascus leucogenys | ENSNLEG00000004624 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011197 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000009780 | 2 retrocopies | |
Sorex araneus | ENSSARG00000004134 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009438 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009849 | 3 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |