>retro_dnov_258
CTGCAGGAAGAGACCTCAGTCCCACATCAGGAAGTCAAATGCCAGGGAAACCAGTAGCTGGAATTTACAGGGGGGTGGAA
GAGAACAGAAACTCTGGCAATGCAACACGGAGCAACATGAAGTCCCGAGAGCAGATCAGGGACGCCAGGAGAGGTCTCCT
GGCACCTTTTCCAAACCCAAAATCTGAAGCAGCAGAACCTCCAAAACTCCCACCGCGTCTTGGGATCCCACCAACGCAGC
TGTCACCAAGCAAACTGAAAAAGCCTGTCCAGGGCAAACAAGCCCCTCCAAATAAGCTCGCAGGGATACTCAACAAGGCA
AACTCCCTGTCCAGCAGAGCTCCAGGAAGAGCGAGGCTGAGCTGCAGGCTGAAGAAGGGACGAGAATAGACGAGTTGGTG
GGAAGTGGGAAGGAGGCAGGAATGAGGATTGGTCTCATCGGTGGCGAGGGCAGGGGAGTTATTGACAACCAAGCTGCTCT
CCAGGGCGAGTTTGTGGTGAAATACCACGGGGACCTCATCGAGATCACTGACGCCAAGAAGTGGGGGGCACTGTGTGCAC
AAGACCCCCCCAGAAGCTGCTACATGGACTATTTTCAGCATCTTGAACAAAACTACTGTGCAGATGAAGCTAGAGAGACG
AATCACCTGGGAAGACTGGTCAACCCAGCAAATGTGGGACCTGCCAGGCCCAGCTGCGCGGCCCTGGAGGC
ORF - retro_dnov_258 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
61.29 % |
Parental protein coverage: |
69.8 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | LQEENSVAHHEVKCQG-KPIAGIYRRREEKRNTGNAARSTMKSEEQKLKDARRGPLAPFPNQKSEAAEPP |
| LQEE.SV.H.EVKCQG.KP.AGIYR..EE.RN.GNA.RS.MKS.EQ...DARRG.LAPFPN.KSEAAEPP |
Retrocopy | LQEETSVPHQEVKCQG<KPVAGIYRGVEENRNSGNATRSNMKSREQ-IRDARRGLLAPFPNPKSEAAEPP |
|
Parental | K-TPTSSCDSANTAVTKQTLKKPGKGKQAPRKKGQGKTQQNRKLTDFYPVRRSSRKSKAELQSEERKRID |
| K.TPT.S.D..N.AVTKQT..K...G...P.K.....TQQ..KL......R.S.....AE....E..RID |
Retrocopy | K<TPTASWDPTNAAVTKQT-EKACPGQTSPSK*ARRDTQQG-KLPVQQSSRKSEAELQAE----EGTRID |
|
Parental | ELIESGKEEGMKIDLIDGKGRGVIATKQFSRGEFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQY |
| EL..SGKE.GM.I.LI.G.GRGVI.......GEFVV.YHGDLIEITDAKK..AL.AQDP...CYM.YFQ. |
Retrocopy | ELVGSGKEAGMRIGLIGGEGRGVIDNQAALQGEFVVKYHGDLIEITDAKKWGALCAQDPPRSCYMDYFQH |
|
Parental | LSKTYCVDATRETNRLGRLIN-HSKCGNCQTKLHDIGG |
| L...YC.D..RETN.LGRL.N..SKCG.CQ..L...GG |
Retrocopy | LEQNYCADEARETNHLGRLVN<PSKCGTCQAQLRGPGG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .00 RPM |
91 .21 RPM |
SRP012922_cerebellum |
0 .00 RPM |
25 .84 RPM |
SRP012922_heart |
0 .00 RPM |
20 .88 RPM |
SRP012922_kidney |
0 .00 RPM |
24 .64 RPM |
SRP012922_liver |
0 .00 RPM |
20 .28 RPM |
SRP012922_lung |
0 .00 RPM |
74 .53 RPM |
SRP012922_quadricep_muscle |
0 .00 RPM |
30 .29 RPM |
SRP012922_spleen |
0 .00 RPM |
89 .51 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_258 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
7 retrocopies.