RetrogeneDB ID: | retro_shar_115 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL864795.1:1407906..1408983(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSHAG00000014155 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSHAG00000015376 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.53 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ENVFMGQSKIYSYMSPHRSSGTRPPLQEENSVAHHDVKCQGKALTELHKKGEEKRIGINAPASTMKSEEQ |
ENVFMGQSKIYSYMS.HRSSGT.PP.QEENSVAHHDVK.QGKALTELHKKGEEKR.G..A.ASTM.SEEQ | |
Retrocopy | ENVFMGQSKIYSYMSSHRSSGTCPPFQEENSVAHHDVKYQGKALTELHKKGEEKRTGDYASASTMDSEEQ |
Parental | KGKELRRDSLEPLPNHKSIAVGNPKAMTLPANAADAAGAKHAPKKPPKTKQASRRKAQGKTQQNRKVTDY |
KG.EL.RD.LEPLPNH.SIA.GNPKAM.LPANAADAAG.KHA.K.PP.TKQASRRKAQGKTQQNRKVTDY | |
Retrocopy | KGRELKRDFLEPLPNHRSIAAGNPKAMALPANAADAAGVKHALKNPPQTKQASRRKAQGKTQQNRKVTDY |
Parental | YPVRRSSRKSKAELQSEEKRKLDELIESGKEEGMKIDIIDGKGRGVIATKQFTRGEFVVEYHGDLIEITD |
YPVRRSSRKSKAE.QSEEKR.LDELIESGKEEGMKIDIIDGKGRGVIATKQFTRGEFVVEYHGDLIE.TD | |
Retrocopy | YPVRRSSRKSKAEIQSEEKRRLDELIESGKEEGMKIDIIDGKGRGVIATKQFTRGEFVVEYHGDLIENTD |
Parental | AKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETDRLGRLINHSKCGNCQTKLHDIDGVPHLILIASR |
AKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETDRLGRLINHSK.GNCQTKLHDIDGVPHLILIASR | |
Retrocopy | AKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETDRLGRLINHSKWGNCQTKLHDIDGVPHLILIASR |
Parental | DIKAGEELLYDYGDRSKASLEAHPWLKH |
DIKAGEELLYDYGDRSKASLEAHPWLKH | |
Retrocopy | DIKAGEELLYDYGDRSKASLEAHPWLKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000010371 | 1 retrocopy | |
Homo sapiens | ENSG00000183955 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000013514 | 1 retrocopy | |
Mus musculus | ENSMUSG00000049327 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031093 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005085 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000005598 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001062 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015376 | 2 retrocopies |
retro_shar_110, retro_shar_115 ,
|
Tursiops truncatus | ENSTTRG00000015884 | 1 retrocopy |