RetrogeneDB ID: | retro_shar_110 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL867574.1:421114..421831(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSHAG00000008429 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSHAG00000015376 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.39 % |
Parental protein coverage: | 62.66 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KKPPKTKQASRRKAQGKTQQNRKVTDYYPVRRSSRKSKAELQSEEKRKLDELIESGKEEGMKIDIIDGKG |
KKP...K.....K......QN..VTDY.P.RRS.RK...EL.SEE...L..LI.SGKEEGM......GKG | |
Retrocopy | KKPRSRKRILKAK---HPSQNYRVTDYFPIRRSTRKNRGELRSEERIRLNALIQSGKEEGMRVGLFEGKG |
Parental | RGVIATKQFTRGEFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETDRLGRLI |
RGVI.TK.F.RG..VVEYHGDLI....AKKREA.YA.DP.TGCYMYYF.Y.SK.YCVDAT.E..RLGRLI | |
Retrocopy | RGVITTKPFQRGDYVVEYHGDLIDLALAKKREARYAKDPDTGCYMYYFHYRSKGYCVDATKESGRLGRLI |
Parental | NHSKCGNCQTKLHDIDGVPHLILIASRDIKAGEELLYDYGDRSKASLEAHPWL |
NHSK.GNCQTKLH.I.GVPHLI.IA.RDI..GEELLYDYGDRSKASLEA.PWL | |
Retrocopy | NHSKSGNCQTKLHPINGVPHLIVIATRDIAVGEELLYDYGDRSKASLEAYPWL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000010371 | 1 retrocopy | |
Homo sapiens | ENSG00000183955 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000013514 | 1 retrocopy | |
Mus musculus | ENSMUSG00000049327 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031093 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005085 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000005598 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001062 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015376 | 2 retrocopies |
retro_shar_110 , retro_shar_115,
|
Tursiops truncatus | ENSTTRG00000015884 | 1 retrocopy |