RetrogeneDB ID: | retro_dord_141 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_372:68219..68790(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Txndc9 | ||
Ensembl ID: | ENSDORG00000013557 | ||
Aliases: | None | ||
Description: | thioredoxin domain containing 9 [Source:MGI Symbol;Acc:MGI:2138153] |
Percent Identity: | 68.37 % |
Parental protein coverage: | 83.63 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | SKVLENQLLQTTKLVEDHLDSEIKKLDQMDEDELERLKEKRLAALRKAQQQKQEWLSKGHGEYREIPSER |
S.......L....L....L..EIKKL...DEDELE..KEKRL.ALRK.QQQKQEWLSKGHGE.REIPSE. | |
Retrocopy | SVLMFSKALKNQLLQTTKLVEEIKKLHLVDEDELEHNKEKRLEALRKVQQQKQEWLSKGHGECREIPSEK |
Parental | D-FFQEVKESK-KVVCHFYR--DSTFRCKILDRHLVILSKKHLETKF-LKLNVDKAPFLCERLRIKVLPT |
D..FQ.VKESK.KVVCHFY.....TFR.KILDRHLVIL....L..KF.LKLNV.KAPFLCERL..K...T | |
Retrocopy | D>LFQ*VKESK<KVVCHFYKV*YPTFRYKILDRHLVIL-RNILRPKF<LKLNVEKAPFLCERLHTKLILT |
Parental | LALIKDGKTQDYVVGFTDL-GNT-DDFTTETLEWRLGCSDILNYSGNLMEPPFQSQ |
LAL.K.GKTQDYV.GFT.L..NT.DDFTTETLE.RL.CSDILNYSGNLM.PPF... | |
Retrocopy | LALVKEGKTQDYVFGFTNL<RNTDDDFTTETLERRLSCSDILNYSGNLMGPPFRAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009936 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000013557 | 1 retrocopy |
retro_dord_141 ,
|
Homo sapiens | ENSG00000115514 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000024615 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000008110 | 1 retrocopy | |
Mus musculus | ENSMUSG00000058407 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012278 | 1 retrocopy |