RetrogeneDB ID: | retro_mluc_717 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429772:18343563..18344240(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TXNDC9 | ||
Ensembl ID: | ENSMLUG00000008110 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.22 % |
Parental protein coverage: | 99.56 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | RMEAHSSVDMFSKVLENQLLQTTKLVEERLDAEIQKMDQMDEDELELLKEKRLKALKKTQQQKQEWLSK- |
RMEA..SV.MF.KVLENQLLQTTKLVEE.LDAEIQK.DQMDEDELE.LKEKR..AL.K.QQQKQE.LSK. | |
Retrocopy | RMEANASVEMFLKVLENQLLQTTKLVEEHLDAEIQKLDQMDEDELEHLKEKRFEALRKAQQQKQE*LSK> |
Parental | GHGEYREIPSERDFFQEVKESKNVVCHFYRDSTFRCKILDKHLAILSKKHLETKFLKLNVE-KAPFLCER |
G.G.YREIPS.RDFFQEV.ESK.V.CHFYRDSTFRCK.LD.HL.ILSKK.LET.FLKLNVE.KAPFL..R | |
Retrocopy | GPGDYREIPSKRDFFQEVRESKKVGCHFYRDSTFRCKMLDIHLVILSKKRLETTFLKLNVE<KAPFLFLR |
Parental | LKIKVIPTLALVKDGKTQDYVAGFTDLGNTDDFTTETLEWRLGCSDIINYSGNLMEPPFQSQKKIGTNFT |
L.IK.IPTLALVKDGKTQDYVA....L.NTDDFTTETLEWRLGCSDI.NY.GNLME.PFQSQKK.GT.F. | |
Retrocopy | LRIKIIPTLALVKDGKTQDYVA*LIGLENTDDFTTETLEWRLGCSDILNYDGNLMELPFQSQKKFGTDFP |
Parental | KLEKKTIR-GKKYDSDSDD |
KLEKKTI..GKKYD.DSDD | |
Retrocopy | KLEKKTIK<GKKYDLDSDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009936 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000013557 | 1 retrocopy | |
Homo sapiens | ENSG00000115514 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000024615 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000008110 | 1 retrocopy |
retro_mluc_717 ,
|
Mus musculus | ENSMUSG00000058407 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012278 | 1 retrocopy |