RetrogeneDB ID: | retro_ptro_1996 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 4:73215418..73215979(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TXNDC9 | ||
Ensembl ID: | ENSPTRG00000012278 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.51 % |
Parental protein coverage: | 82.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEADASVDMFSKVLEHQLLQTTKLVEEHLDSEIQKLDQMDEDELERLKEKRLQALRKAQQQKQEWLSKGH |
MEADASVDMFSKVLE.QLLQTTKLVEEHLDSEIQKLDQMDEDELE..KEKRL.ALRKAQQQKQEWLSKGH | |
Retrocopy | MEADASVDMFSKVLENQLLQTTKLVEEHLDSEIQKLDQMDEDELEHIKEKRLEALRKAQQQKQEWLSKGH |
Parental | GEYREIPSERDFFQEVKESENVVCHFYRDSTFRCKILDRHLAILSKKHLETKFLKLNVEKAPFLCERLRI |
GEYREIPSERDFFQEVKES..VVCHFYRDSTFRCKILDR.LAILS.KHLETKFLKLNVEKAPFLCERL.I | |
Retrocopy | GEYREIPSERDFFQEVKESKKVVCHFYRDSTFRCKILDRFLAILSEKHLETKFLKLNVEKAPFLCERLHI |
Parental | KVIPTLALLKDGKTQDYVVGFTDLGNTDDFTTETLEWRLGSSDILNY |
KVIPTLAL.KDGK.QDYVVGFTDLGNTDDFTTETLEW.L..SDILNY | |
Retrocopy | KVIPTLALVKDGKAQDYVVGFTDLGNTDDFTTETLEWGLSCSDILNY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .02 RPM | 6 .74 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .27 RPM |
SRP007412_heart | 0 .00 RPM | 6 .03 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .62 RPM |
SRP007412_liver | 0 .00 RPM | 7 .46 RPM |
SRP007412_testis | 0 .00 RPM | 10 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3042 |
Gorilla gorilla | retro_ggor_2096 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009936 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000013557 | 1 retrocopy | |
Homo sapiens | ENSG00000115514 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000024615 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000008110 | 1 retrocopy | |
Mus musculus | ENSMUSG00000058407 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012278 | 1 retrocopy |
retro_ptro_1996 ,
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