RetrogeneDB ID: | retro_dord_221 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_5911:101206..101520(-) | ||
Located in intron of: | ENSDORG00000009638 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Dnajc24 | ||
Ensembl ID: | ENSDORG00000000248 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily C, member 24 [Source:MGI Symbol;Acc:MGI:1919522] |
Percent Identity: | 61.82 % |
Parental protein coverage: | 72.11 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | MMAFKQTPKK-DWYSILGADPSADVADLKQKYQKLVLMYHPDKQ-STDVP-AGMLEEYIQKFIEIDQ-AW |
MMAFKQ.PKK.DW..ILGADPSADVAD............H.....STD.P..G...EYI.KFI.I.Q..W | |
Retrocopy | MMAFKQRPKK<DW*GILGADPSADVADXXXXXXXXLVLMHHPDK<STDMP<IGIVDEYIKKFIKINQ<GW |
Parental | KILGNEETKKEYDLQRHDDELQNMGPVDAKVYLEEMSWNE |
.ILGNEET..EY.LQ.H.D.L.NMGPVDA.VY.EEMSWNE | |
Retrocopy | EILGNEET*EEYELQQHEDDL*NMGPVDA*VYFEEMSWNE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000013512 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000000248 | 3 retrocopies |
retro_dord_221 , retro_dord_395, retro_dord_77,
|
Echinops telfairi | ENSETEG00000003054 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007553 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000006845 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017878 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007848 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001638 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003390 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000003471 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009243 | 1 retrocopy |