RetrogeneDB ID:

retro_mmur_1052

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_17836:8676..8950(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DNAJC24
Ensembl ID:ENSMICG00000007553
Aliases:None
Description:DnaJ (Hsp40) homolog, subfamily C, member 24 [Source:HGNC Symbol;Acc:26979]


Retrocopy-Parental alignment summary:






>retro_mmur_1052
CACCGCATCCTGGGGGCAGACCCATCTGCAAATGGGTCGCACCTAAAACAAATGTATCAAAAACTCATATCAATGTATCA
TCCGGATAAACACAGCCGCAGCCAAGCTGGCAGTGACAGTAGAGAAATGAATATAGAAGTTCATCGAAATTGATCAGGCC
TAGAAAATTCTAGGGAATCAAGAGATGAAAAAGGAGTATGACTCGCAGCGGTACGAAGGTGGCCTAAGAAATATGGGACC
AGTAGATGCTCTTGAAGGAACGTCTTGGAAGGAA

ORF - retro_mmur_1052 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 69.47 %
Parental protein coverage: 89.52 %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalYSVLGADPSANMSDLKQKYQKLILMYHPDKQSTDVP-AGTVEKCIQKFIEIDQAWKILGNEETKKEYDLQ
...LGADPSAN.S.LKQ.YQKLI.MYHPDK.S.....A.TVEK.I.KFIEIDQA.KILGN.E.KKEYD.Q
RetrocopyHRILGADPSANGSHLKQMYQKLISMYHPDKHSRSQA>AVTVEK*I*KFIEIDQA*KILGNQEMKKEYDSQ
ParentalRHEDDLRNMGPVDAQIYLEEMSWNE
R.E..LRNMGPVDA...LE..SW.E
RetrocopyRYEGGLRNMGPVDA---LEGTSWKE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1052 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1052 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 16 retrocopies.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG000000135121 retrocopy
Dipodomys ordii ENSDORG000000002483 retrocopies
Echinops telfairi ENSETEG000000030541 retrocopy
Microcebus murinus ENSMICG00000007553 3 retrocopies
retro_mmur_1052 , retro_mmur_1150, retro_mmur_973,
Macaca mulatta ENSMMUG000000068451 retrocopy
Nomascus leucogenys ENSNLEG000000178781 retrocopy
Otolemur garnettii ENSOGAG000000078481 retrocopy
Ochotona princeps ENSOPRG000000016381 retrocopy
Pongo abelii ENSPPYG000000033902 retrocopies
Pan troglodytes ENSPTRG000000034711 retrocopy
Tarsius syrichta ENSTSYG000000092431 retrocopy



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