RetrogeneDB ID: | retro_dord_406 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_17062:26356..26659(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Erh | ||
Ensembl ID: | ENSDORG00000006912 | ||
Aliases: | None | ||
Description: | enhancer of rudimentary homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:108089] |
Percent Identity: | 87.13 % |
Parental protein coverage: | 98.06 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | HTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVY |
HTILLVQP.KRPEGRTYADY.SV..CMEGVCKMYEEHLKRM.PN.PSI.YDISQLFDFID.LADLSCLVY | |
Retrocopy | HTILLVQPSKRPEGRTYADYDSVDGCMEGVCKMYEEHLKRMSPNCPSIIYDISQLFDFIDHLADLSCLVY |
Parental | RADTQTYQPYNKDWIKEKIYVLLRRQAQQAG |
RADTQTYQPYNKDWIK.KIY.LLR.QAQ..G | |
Retrocopy | RADTQTYQPYNKDWIKGKIYALLRAQAQRPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014529 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014940 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000006912 | 3 retrocopies |
retro_dord_250, retro_dord_406 , retro_dord_562,
|
Equus caballus | ENSECAG00000019178 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014602 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000011879 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021571 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004636 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000029388 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000004883 | 3 retrocopies |