>retro_dord_414
TTATTTGTGAAAGAGAATCAAGAGCTGAGAACAGCAGAAGGAGCTGTGAGGGATCTGCCGAATGGGGTGAAACTTCGAGA
TGTCGATTTTGCCACCCCAACCCAAATGAAGGAGATGTTTCCGTCAGGCAGCATTCGGATGACCAACAAGGGAGAGAAGC
ATGGAACCATCACAGCCAGGCTTCGTGAAGACAATTTTGAAATTACCACACTAAGGATGGATGTCACAACTGACGGAAGA
CATGCCTAGGTAGAATTCACAACTGCCGGACAGAAGGATGCTGAACACAGAGACCTCACTATAAACTCCATGTTTCTAGG
CCTTGATGGTTCTTGATTTAATTACTTTAATGGCTATGAAGATTTTAAAAAAATAAGAAAGTTACGATTTGTAGGACACA
CACATCAAAGAATACACAAAGATTAACTTCGGATTTTAAGCTACTTCAGGTTTAATGGCAGAATTGTGGACAAACCTGGT
GAACATGATGCTGAGCAATCGCAGAAAATGCGAAAGGCTTGGCTGGACTATCAGGAGAGTGCATTTGGGTAGAACTGAAA
AAAATTCTTGTTGGTAAATGTGTAAACGACTTATTTCACCTGATCTATGATCTTGATGTGGCTCCTCATATAGGTTTACC
CACAATTGCAAGTTTAGAAGAATTTAGTGAAGTCAGTAAAAATGTTGAAAGTTGCTCAGCAAAGCCAAGGACCATCTTGG
CCTCACTGCAGAAAGTACAAGATGATGTCACAAAATGTGATTTGCGGTTGAAGATTTCAAAAGAAGAGGAAAAACCTTGG
CTTATTTAGAGTTAAAAATAAGAAAGACTTAGTTAAAGCATCAGATTGTTCTGAACCATTGAAACCCTATCAAAACTTCA
TGGTAGATTCCAGAGAGCCAGATGCAAGTGCCCGAGTATGTGAGCTGCTGAAGTACCAGAGTGAACGCAGTCTCCTCATG
GAGATGCAGCAGCGGTCCCTGCCCCCTTCCCTATGAGCAGACATGACATTAGAAAAGTGGGCATTTCTTCCCGGAAGGAA
ACTGGTGCTGTGTTACAGCAACTGCATGAACAGTGAAAAAAAAAAAGTGGCTGCCAAATGGAAAAAGAGGAATTCCTAAG
TTACATAAAGAAGACC
ORF - retro_dord_414 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
76.86 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | LFVKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIRMINNKGEKHGTITARLHEENF |
| LFVKEN.ELR.A.GAVRDL.NGVK..DVDF...ATPTQMKEMF.S..IRM..NKGEKHGTITARL.E.NF |
Retrocopy | LFVKENQELRTAEGAVRDLPNGVKLRDVDF---ATPTQMKEMFPSGSIRM-TNKGEKHGTITARLREDNF |
|
Parental | EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKN-KKVRFVGHAHQ |
| EITTLR.DVTTDGRHA.VEFTT..QKDAE.RDLTINSMFLG.DG..F.YFNGYED.K...K.RFVGH.HQ |
Retrocopy | EITTLRMDVTTDGRHA*VEFTTAGQKDAEHRDLTINSMFLGLDGS*FNYFNGYEDFKKIRKLRFVGHTHQ |
|
Parental | RIQEDYLRILRYFRFYGRIVDKPGEHDPETLEAI-AENAKGLAGISGERIWVELKKILVGNHVNHLIHLI |
| RI..D.LRIL.YFRF.GRIVDKPGEHD.E......A....GL...SGE.IWVELKKILVG..VN.L.HLI |
Retrocopy | RIHKD*LRILSYFRFNGRIVDKPGEHDAEQSQKM<AKGLAGL---SGECIWVELKKILVGKCVNDLFHLI |
|
Parental | YDLDVAPHIGLPTPSSLEEFNQVSKNVEGCSAKPMTILASLLKVQDDVTKLDLRLKISKEE-KNLGLFIV |
| YDLDVAPHIGLPT..SLEEF..VSKNVE.CSAKP.TILASL.KVQDDVTK.DLRLKISKEE.KNLGLF.V |
Retrocopy | YDLDVAPHIGLPTIASLEEFSEVSKNVESCSAKPRTILASLQKVQDDVTKCDLRLKISKEE>KNLGLFRV |
|
Parental | KNRKDLVKASDSSEPLKPYQDFIIDSREPDASARVCELLKYQGERGLLKEMEQWSIP-PFPVSGHDIRKV |
| KN.KDLVKASD.SEPLKPYQ.F..DSREPDASARVCELLKYQ.ER.LL.EM.Q.S.P.PFP.S.HDIRKV |
Retrocopy | KNKKDLVKASDCSEPLKPYQNFMVDSREPDASARVCELLKYQSERSLLMEMQQRSLP<PFPMSRHDIRKV |
|
Parental | GISSGKEIGALLQQLREQ-WKKSGYQMEKEELLSYIKKT |
| GISS.KE.GA.LQQL.EQ.....G.QMEKEE.LSYIKKT |
Retrocopy | GISSRKETGAVLQQLHEQXXXXXGCQMEKEEFLSYIKKT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Dipodomys ordii was not studied using RNA-Seq expression data.
Dipodomys ordii was not studied using ChIP-Seq data.
Dipodomys ordii was not studied using EST data.
Dipodomys ordii was not studied using FANTOM5 data.
retro_dord_414 was not experimentally validated.
Retrocopy orthology:
Dipodomys ordii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
5 parental genes, and
6 retrocopies.