RetrogeneDB ID: | retro_pmar_17 | ||
Retrocopylocation | Organism: | Lamprey (Petromyzon marinus) | |
Coordinates: | GL484055:4552..5156(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPMAG00000009051 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | trnt1 | ||
Ensembl ID: | ENSPMAG00000002236 | ||
Aliases: | None | ||
Description: | tRNA nucleotidyl transferase, CCA-adding, 1 [Source:ZFIN;Acc:ZDB-GENE-040625-176] |
Percent Identity: | 83.66 % |
Parental protein coverage: | 73.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LDGTLYDYFNGMEDLKNKKVRFVGDPEKRIQEDYLRILRYFRFYGSVAEHADAHEPQTLVAIERNAAGLA |
LDGTLY.YFNGMEDLKNK.VRFVGDPEKRIQEDYLRILRYFRFYG.VAEHADA............A.GLA | |
Retrocopy | LDGTLYGYFNGMEDLKNKRVRFVGDPEKRIQEDYLRILRYFRFYGFVAEHADASRRRWRRSSATRAGGLA |
Parental | GIAGERIWVELKKTLMGNHASHLFALIYKLGVAPHIGLPCDGNVGELQRVWERSRASAPRPITLLSALLR |
GIAGERIWVELKKTLMGNHASHLFALIYKLGVAP.IGLPCDGNVGELQRVWERSRASAPRPITLLSAL.. | |
Retrocopy | GIAGERIWVELKKTLMGNHASHLFALIYKLGVAPRIGLPCDGNVGELQRVWERSRASAPRPITLLSALPC |
Parental | CADDVGHLDARLRLSKDERNLAAFVVKHRGELRPDADGDD-PLGSIKAFVTDARPHGEAKAR |
CADDVG.LDARL.LSKDERNLAAFV.KHRGELRP.ADGDD.PLGS.KAFVT.A..H.....R | |
Retrocopy | CADDVGQLDARLCLSKDERNLAAFVIKHRGELRPAADGDD>PLGSVKAFVTEAKAHASELPR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015466 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008837 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014035 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018177 | 2 retrocopies | |
Homo sapiens | ENSG00000072756 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015286 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003226 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000002236 | 1 retrocopy |
retro_pmar_17 ,
|
Pongo abelii | ENSPPYG00000013702 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000014564 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000006432 | 1 retrocopy |