RetrogeneDB ID: | retro_dord_598 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_38331:3578..4372(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Vps37a | ||
Ensembl ID: | ENSDORG00000014879 | ||
Aliases: | None | ||
Description: | vacuolar protein sorting 37A (yeast) [Source:MGI Symbol;Acc:MGI:1261835] |
Percent Identity: | 84.56 % |
Parental protein coverage: | 68.8 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | TKSASSSSAAG-SPAGLTSLQQQKQRLIESLRNSHSSIAEIQKDVEYRLPFTVNNLTININILLPPQFPQ |
T.SAS.S.A......GLTSLQQQKQ.LIESLRNSHSSIAEIQKDVEYRLPFTVNNLTININI.LPPQFPQ | |
Retrocopy | TESASFSTAGS<PGGGLTSLQQQKQCLIESLRNSHSSIAEIQKDVEYRLPFTVNNLTININIVLPPQFPQ |
Parental | EKPVISVYPPIRHHLMDKQGIYVTSPLVSNFTMHSDLGKIIQSLLDEFWKNPPVLAPTSTAFPYLYSNPS |
EKP.ISVYPPI.H.LMDK.GIYVTSPLVSNFT.HSDLGKI.QSLLDEFWKN.PVLAPTSTAFPYLYSNP. | |
Retrocopy | EKPAISVYPPI*HPLMDKHGIYVTSPLVSNFTIHSDLGKISQSLLDEFWKNSPVLAPTSTAFPYLYSNPG |
Parental | GLPPYASQGFPFLPAYPPQEANRNITSLS-VADTVSSSTTSYTTAKPAAPTFAVLSSLPLPVPTMETSTP |
GLPPYAS.GFPFLPAYPPQEANR..TSL..V.DTVSSST.SYTTAK.AAPTF.VLSSLPLPVPTMETSTP | |
Retrocopy | GLPPYAS*GFPFLPAYPPQEANR--TSLL>VTDTVSSST-SYTTAKSAAPTFGVLSSLPLPVPTMETSTP |
Parental | ISQNGFGYKMPDVPDAFPELSELSVSQLTDMN-EQEEVLLEQFLSLPQLKQIINDKDDLVKS |
ISQNGFGYKMPDVPDAFPELSEL.......MN...E..L.EQFLSLPQLKQIINDK.DLVKS | |
Retrocopy | ISQNGFGYKMPDVPDAFPELSELCHNSQI*MN<QEEVLL-EQFLSLPQLKQIINDKGDLVKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000682 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011769 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014879 | 9 retrocopies |
retro_dord_257, retro_dord_294, retro_dord_542, retro_dord_544, retro_dord_580, retro_dord_598 , retro_dord_631, retro_dord_668, retro_dord_751,
|
Homo sapiens | ENSG00000155975 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011650 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002558 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018386 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000020019 | 1 retrocopy |