RetrogeneDB ID: | retro_dord_631 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_44006:4361..5523(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Vps37a | ||
Ensembl ID: | ENSDORG00000014879 | ||
Aliases: | None | ||
Description: | vacuolar protein sorting 37A (yeast) [Source:MGI Symbol;Acc:MGI:1261835] |
Percent Identity: | 85.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | TKSASSSSAAGSPA-GLTSLQQQKQRLIESLRNSHSSIAEIQKDVEYRLPFTVNNLTININILLPPQFPQ |
TKS.S.S.A..S...GLTSLQQQKQ.LIESL.NSHSSIAEIQK.VEYRLPFTVNNLTININILLPPQFPQ | |
Retrocopy | TKSTSFSAAGSSVV<GLTSLQQQKQCLIESLWNSHSSIAEIQKHVEYRLPFTVNNLTININILLPPQFPQ |
Parental | EKPVISVYPPIRHHLMDKQGIYVTSPLVSNFTMHSDLGKIIQSLLDEFWKNPPVLAPTSTAFPYLYSNPS |
EKPVISVYPPI.HHLMDKQ.IYVTSPLVS.FTMHSDL.KI.QS.LDEFWKN.PVLAPTSTAFPYLYSNP. | |
Retrocopy | EKPVISVYPPIQHHLMDKQVIYVTSPLVSKFTMHSDLEKISQSRLDEFWKNSPVLAPTSTAFPYLYSNPG |
Parental | GLPPYASQGFPFLPAYPPQEANR-NITSLSVA-DTVSSSTTSYTTAKPAAPTFAVLSSLPLPVPTMETST |
GLPPYA.QGFPFLPAYPPQEANR.NITSL.......SS.T.SYTTAKPAAPTF.VLSSLPLPVPTMETST | |
Retrocopy | GLPPYAFQGFPFLPAYPPQEANR<NITSLLLT<TVSSSTT-SYTTAKPAAPTFGVLSSLPLPVPTMETST |
Parental | PISQNGFGYKMPDVPDAFPELSELSVSQLTDMN-EQEEVLLEQFLSLPQLKQIINDKDDLVKSIEELAR- |
PISQ..FG..MPDVPDAFPELSEL.......MN...E..L.EQFL.LPQLKQIINDK.DLVKSI.ELAR. | |
Retrocopy | PISQSRFG*EMPDVPDAFPELSELCHNSQI*MN<QEEVLL-EQFLCLPQLKQIINDKYDLVKSIDELAR< |
Parental | KNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAED |
KNLLLEPSLEAKRQ.VLDKYELLTQMKS.FEKKMQRQHELSESCSASALQARLKV.AHEAEEES.NIAED | |
Retrocopy | KNLLLEPSLEAKRQRVLDKYELLTQMKSMFEKKMQRQHELSESCSASALQARLKVGAHEAEEESNNIAED |
Parental | FLEGKTEIDDFLSSFMEKRTICHCRRAKEEKLQQVIAMHSQFHAPL |
FLEGKTEIDDFLSSFMEKRTICHCRRAKEEKLQQ.IA.HSQFHAPL | |
Retrocopy | FLEGKTEIDDFLSSFMEKRTICHCRRAKEEKLQQMIAIHSQFHAPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000682 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011769 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014879 | 9 retrocopies |
retro_dord_257, retro_dord_294, retro_dord_542, retro_dord_544, retro_dord_580, retro_dord_598, retro_dord_631 , retro_dord_668, retro_dord_751,
|
Homo sapiens | ENSG00000155975 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011650 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002558 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018386 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000020019 | 1 retrocopy |