RetrogeneDB ID: | retro_dord_668 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_50120:9984..10697(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Vps37a | ||
Ensembl ID: | ENSDORG00000014879 | ||
Aliases: | None | ||
Description: | vacuolar protein sorting 37A (yeast) [Source:MGI Symbol;Acc:MGI:1261835] |
Percent Identity: | 86.59 % |
Parental protein coverage: | 61.64 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | TKSASSSSAAGSPA-GLTSLQQQKQRLIESLR-NSHSSIAEIQKDVEYRLPFTVNNLTININILLPPQFP |
TKS.S.S.A......GLTSLQQQKQRLIES.R.NSHSSIAEIQ.DVEYRLPFTVNNLTININILLPPQFP | |
Retrocopy | TKSTSFSTAGSPVV<GLTSLQQQKQRLIESPR<NSHSSIAEIQNDVEYRLPFTVNNLTININILLPPQFP |
Parental | QEKPVISVYPPIRHHLMDKQGIYVTSPLVSNFTMHSDLGKIIQSLLDEFWKNPPVLAPTSTAFPYLYSNP |
.EK.VISVYPPIRH.LMDKQGIYVTSPLVSNFTMHSDLGKI.QSLLDEFWKN.PVLAPTSTAFPYLYSNP | |
Retrocopy | *EKTVISVYPPIRHPLMDKQGIYVTSPLVSNFTMHSDLGKISQSLLDEFWKNSPVLAPTSTAFPYLYSNP |
Parental | SGLPPYASQGFPFLPAYPPQEANRNITSL-SVADTVSSSTTSYTTAKPA-APTFAVLSSLPLPVPTMETS |
.GL.PYASQ.FPFLPAYPPQEANR..TSL.SV.DTVSSST.SYTTA..A..PTF.VLSSLPLPVPTMETS | |
Retrocopy | GGLLPYASQCFPFLPAYPPQEANR--TSL>SVTDTVSSST-SYTTANSA<SPTFGVLSSLPLPVPTMETS |
Parental | -TPISQNGFGYKMPDVPDAFPELSELSVSQLTDMNE |
.TPI.QNGFG.KMPDVPDAFPELSELSVSQLTDMNE | |
Retrocopy | >TPINQNGFG*KMPDVPDAFPELSELSVSQLTDMNE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000682 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011769 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014879 | 9 retrocopies |
retro_dord_257, retro_dord_294, retro_dord_542, retro_dord_544, retro_dord_580, retro_dord_598, retro_dord_631, retro_dord_668 , retro_dord_751,
|
Homo sapiens | ENSG00000155975 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011650 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002558 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018386 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000020019 | 1 retrocopy |