RetrogeneDB ID: | retro_dord_692 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_5647:56075..56817(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Stk16 | ||
Ensembl ID: | ENSDORG00000000152 | ||
Aliases: | None | ||
Description: | serine/threonine kinase 16 [Source:MGI Symbol;Acc:MGI:1313271] |
Percent Identity: | 87.7 % |
Parental protein coverage: | 82.3 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | EQQDREEAQREANMHRLFHHPNILHLMAYSLRERGAKYEAWLLLPFFKRGTLWNEIERLKDQGNFLTEDQ |
E.QD.EEAQREAN.....H.PNILHLMAYSLRE.GAKYEAWLLLPFFKRGTLWNEIERLKDQGNFLTEDQ | |
Retrocopy | EGQDWEEAQREANV----HGPNILHLMAYSLREQGAKYEAWLLLPFFKRGTLWNEIERLKDQGNFLTEDQ |
Parental | ILRLLLG-ICRGLEAIHAKGYAHRDLKPTNILLGDEEQPVLMDLGSMNQACIHVEGSRQALALQDWAAQR |
ILRL.LG.ICRGLEAIHAKGY.HRDL.PTNILLGDEEQPVLMDLGSMNQACIHVE.SRQALALQ.WAAQR | |
Retrocopy | ILRLYLG>ICRGLEAIHAKGYVHRDLMPTNILLGDEEQPVLMDLGSMNQACIHVESSRQALALQNWAAQR |
Parental | CTISYRAPELFSVQSYCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLNIPQSPRHSP |
CTISYRAPELFSVQSYCVIDERTDVWSLGCVL.AMMFGEGPYDMVFQKG.SVALA.QNQLNIPQS.RHS. | |
Retrocopy | CTISYRAPELFSVQSYCVIDERTDVWSLGCVLSAMMFGEGPYDMVFQKGGSVALALQNQLNIPQSRRHSS |
Parental | ALRQLLTSMMTVDPQQRPHIPLLLSQLEALQPPTLGQHTTQI |
AL..LLTSMMTVDPQQRPH.PLLLSQLE.L.PPTL......I | |
Retrocopy | ALQ*LLTSMMTVDPQQRPHVPLLLSQLEVLPPPTLDHSNMNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000000152 | 1 retrocopy |
retro_dord_692 ,
|
Equus caballus | ENSECAG00000014093 | 1 retrocopy | |
Homo sapiens | ENSG00000115661 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010907 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006422 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000008066 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013202 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012948 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025197 | 2 retrocopies |