RetrogeneDB ID: retro_mluc_1213

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429807:140249..140741(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: STK16
• Ensembl ID: ENSMLUG00000008066
• Aliases: None
• Description: None

Sequence

>retro_mluc_1213
AAGAAACTGGGGGAGGGTGGGTTCAGCTATGTGGACCTAGTGGAGGGGTTACATGATGGACACTTCTACGCACTGAAGTG
AATCCTGTGTCATGAGCAGCAGGATGTGGAGGAGGCCCAGCGAGAAGCAGATATGCATCACCTCTTCAATCACCCCAACA
TCCTTCACCTCGTGGCTTATTGTCTGAAGGAGCGGGGCACAAAACATGAGGCCTGGCTGCTACTACCTTACTTGAAGAGA
GGTACGCTGTGGAATGAGATAGAAAGGCTGAAAGACAAAGGCAACTTTTTGACTGAAGATGAAATCCTTCAGCTGTTGCT
GGGCATCTGCAGAGGACTTGAAGCCATTCATGCCCAGGGTTATGCCCACAGGGATCTGAAGCCCACCAATATATTGCTTG
GAGATGAGGGGCAGCCGGTTTTAATGGACTTGGGTTCCATGAAGCAAGCACGCATCCATGTGGAGAGCTCCCGCCAAGCT
CTGGCCCTGCAG

Alignment

ORF - retro_mluc_1213 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.17 %
• Parental protein coverage: 53.77 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDVEEAQREADMHHLFDHPNILHLVAYCLKERGTKHE
          .KLGEGGFSYVDLVEGLHDGHFYALK.ILCHEQQDVEEAQREADMHHLF.HPNILHLVAYCLKERGTKHE
Retrocopy KKLGEGGFSYVDLVEGLHDGHFYALK*ILCHEQQDVEEAQREADMHHLFNHPNILHLVAYCLKERGTKHE

Parental  AWLLLPYLKRGTLWNEIERLKDKGNFLTEDEILQLLLGICRGLEAIHAQGYAHRDLKPTNILLGDEGQPV
          AWLLLPYLKRGTLWNEIERLKDKGNFLTEDEILQLLLGICRGLEAIHAQGYAHRDLKPTNILLGDEGQPV
Retrocopy AWLLLPYLKRGTLWNEIERLKDKGNFLTEDEILQLLLGICRGLEAIHAQGYAHRDLKPTNILLGDEGQPV

Parental  LMDLGSMKQARIHVESSRQALALQ
          LMDLGSMKQARIHVESSRQALALQ
Retrocopy LMDLGSMKQARIHVESSRQALALQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1213 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000000152	1 retrocopy	retro_dord_692,
Equus caballus	ENSECAG00000014093	1 retrocopy	retro_ecab_166,
Homo sapiens	ENSG00000115661	1 retrocopy	retro_hsap_1334,
Gorilla gorilla	ENSGGOG00000010907	1 retrocopy	retro_ggor_1040,
Macropus eugenii	ENSMEUG00000006422	1 retrocopy	retro_meug_1579,
Myotis lucifugus	ENSMLUG00000008066	1 retrocopy	retro_mluc_1213 ,
Pongo abelii	ENSPPYG00000013202	1 retrocopy	retro_pabe_1108,
Pan troglodytes	ENSPTRG00000012948	1 retrocopy	retro_ptro_911,
Ictidomys tridecemlineatus	ENSSTOG00000025197	2 retrocopies	retro_itri_1662, retro_itri_602,