RetrogeneDB ID: retro_meug_1579

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold46832:12061..12980(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: STK16
• Ensembl ID: ENSMEUG00000006422
• Aliases: None
• Description: serine/threonine kinase 16 [Source:HGNC Symbol;Acc:11394]

Sequence

>retro_meug_1579
GTGGGCCACATGCTCTGTATTTGCTCCCGAGGAACCCTCACTATCCACAACAAGAGATATCTCTTCATATAGAAACTGGA
AGAGGTTGGATTTCAGCTACTTGGACCTGGTGGAGGGACTGCAGGAGGGGCACTTTTATGCCCTGAAGAGAATCCCATGC
CATGAGCAACAGGACCAGGAAGAGGTCCAGTGAGAGGCTGACATGCAGAAACCCTTTCAGCACTCCAATATCCTTCACCT
TGAAGCCTATTGCTTGACAGAATGGGGATCCAGGCCGGAGGCCTGGCTGCTGCTACCTTCTTCTAGAAGAGTATGCTACA
GAATCAAGTGGAAGGGCTGAAAGACAAAGGCGTATTCCCTGTGTGAGGATCAAATCCTGCTGCTGCTGCTAGGTATTTGC
AGAGGCCTAGAGGGCATTCGTGCTAAGGGTTATGTCCACAGGGACCTGAAATCAACCAATATTTTGCTTAGAGATGATGG
GCAGACAGTGTTAATGGACTGTGGTTCCATGAATCAGGCATGAATCCAAGTGGAAGGCTCCTGACAGGCATTATTAGCCT
TGCAGGACTGGGCAGCCCAGCTTTGGACCATCTCCTATGGTACCCCTGAGCTCTTCTCTGTACAGAGTCATTGTGTCATT
TATGAACCAATTGACATCTGGTCCCTAGGTTGTGTGCTGTGTGTTATGATGTTTGGAGAAGGTCCCTATGATATGGTGTT
CCAGAAAGGGGACAGTGTGGCCTTGGCAGTACAGAACCAGCTCAGAATTCCCCAGGACCTGAGGCATTCCCCATCATTAA
GGCAGCTATTGGCCTTCATGGTGACTGTGGACTCCCAGGGTCTACCACATACTTCTCACCTCCTCAGTCTTTTGGAAAGT
GTGTAACCCACAGCTCCAGGCTAACATACCACATGCATA

Alignment

ORF - retro_meug_1579 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.67 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 7
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MGHTLCICSRGTLTIDNKRYLFIQKLGEGGF-SYVDLVEGLHDGHFYALKRILCHEQQDQEEAQREADMH
          .GH.LCICSRGTLTI.NKRYLFI.KL.E.GF.SY.DLVEGL..GHFYALKRI.CHEQQDQEE.Q.EADM.
Retrocopy VGHMLCICSRGTLTIHNKRYLFI*KLEEVGF>SYLDLVEGLQEGHFYALKRIPCHEQQDQEEVQ*EADMQ

Parental  RLFQHPNILRLEAYCLTERGSKQEAWLLLP-FFKKGTLWNEVERLKDKGNF-LSEDQILLLLSGICRGLE
          ..FQH.NIL.LEAYCLTE.GS..EAWLLLP.FF.K..L.N.VE.LKDKG.F.L.EDQILLLL.GICRGLE
Retrocopy KPFQHSNILHLEAYCLTEWGSRPEAWLLLP<FF*KSMLQNQVEGLKDKGVF>LCEDQILLLLLGICRGLE

Parental  AIHAKGYAHRDLKPTNILLGDDGQPVLMDLGSVNQARIRVEGSRQA-LALQDWAAQRCTISYRAPELFSV
          .I.AKGY.HRDLK.TNILL.DDGQ.VLMD.GS.NQA.I.VEGS.QA.LALQDWAAQ..TISY..PELFSV
Retrocopy GIRAKGYVHRDLKSTNILLRDDGQTVLMDCGSMNQA*IQVEGS*QALLALQDWAAQLWTISYGTPELFSV

Parental  QSHCVIDERTDIWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQ-QLSIPQP-RHSPALRQLLASMMTVD
          QSHCVI.E..DIWSLGCVL..MMFGEGPYDMVFQKGDSVALAVQ.QL.IPQ..RHSP.LRQLLA.M.TVD
Retrocopy QSHCVIYEPIDIWSLGCVLCVMMFGEGPYDMVFQKGDSVALAVQNQLRIPQDLRHSPSLRQLLAFMVTVD

Parental  PQCRPHTSLLLSQLESLQPTAPGQHTTHI
          .Q..PHTS.LLS.LES..PTAPG.HTT.I
Retrocopy SQGLPHTSHLLSLLESV*PTAPG*HTTCI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1579 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1579 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000000152	1 retrocopy	retro_dord_692,
Equus caballus	ENSECAG00000014093	1 retrocopy	retro_ecab_166,
Homo sapiens	ENSG00000115661	1 retrocopy	retro_hsap_1334,
Gorilla gorilla	ENSGGOG00000010907	1 retrocopy	retro_ggor_1040,
Macropus eugenii	ENSMEUG00000006422	1 retrocopy	retro_meug_1579 ,
Myotis lucifugus	ENSMLUG00000008066	1 retrocopy	retro_mluc_1213,
Pongo abelii	ENSPPYG00000013202	1 retrocopy	retro_pabe_1108,
Pan troglodytes	ENSPTRG00000012948	1 retrocopy	retro_ptro_911,
Ictidomys tridecemlineatus	ENSSTOG00000025197	2 retrocopies	retro_itri_1662, retro_itri_602,