RetrogeneDB ID: | retro_itri_602 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393305.1:316038..316768(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STK16 | ||
Ensembl ID: | ENSSTOG00000025197 | ||
Aliases: | None | ||
Description: | serine/threonine kinase 16 [Source:HGNC Symbol;Acc:11394] |
Percent Identity: | 71.6 % |
Parental protein coverage: | 80.33 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | YALKRILCHEQQDREEAQREADMHRLFHHPNILRLVAYCLKERGAKHEAWLLLPFFKRGT-LWNEIER-L |
YALK.ILCH...D.EEAQ.EADMH.LF..P.ILR..AYCL.E.GAK.EAWLLLPFFK.G..L.NEIER.. | |
Retrocopy | YALK*ILCHK*LD*EEAQQEADMHCLFQLPSILRPMAYCLREPGAKQEAWLLLPFFKKGS<LRNEIER<A |
Parental | KDKGNFLTE-DQILRLLL-GICRGLEAIHTKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIQVEGSR |
KDK..FLT..DQIL.LLL.GICRGLEAIH.KGY.H.DLKPTNIL.GDE.QPVLMDLGSMNQAC...EGS. | |
Retrocopy | KDKDKFLTG<DQILQLLL<GICRGLEAIHAKGYDHGDLKPTNILFGDEWQPVLMDLGSMNQACSHMEGSC |
Parental | Q-ALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQ |
Q.ALTL.D......TI.Y.APE.FS.QSHCVI.E..DVWSLG.VLY..MFGEGPYDMVFQK..S.A.AVQ | |
Retrocopy | Q<ALTL*D*TTDPYTIFYLAPEPFSMQSHCVIHEWIDVWSLGYVLYPVMFGEGPYDMVFQKAHSMAFAVQ |
Parental | NQLSIPQSPRHSSALRQLLASMMTVDLQQRPHIPLLLSQL |
N.L.I.QSPRH.S.L.QLLASMMTV..QQ.PHIP.L.S.. | |
Retrocopy | NLLNILQSPRHFSTLWQLLASMMTVNFQQHPHIPFLYSSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000000152 | 1 retrocopy | |
Equus caballus | ENSECAG00000014093 | 1 retrocopy | |
Homo sapiens | ENSG00000115661 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010907 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006422 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000008066 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013202 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012948 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025197 | 2 retrocopies |
retro_itri_1662, retro_itri_602 ,
|