>retro_drer_17
ATGCCACCAAAGAAGGCAGACGGGGTGAAGAAAGCAAGAGCTCCAGCTAAGAGGAAACTGGCTGAAGAATTCCCGTCTGG
AGAAGTCCTGACAGATAACGCAAAGAAAAAATGGAAGCTTGGATCAGCTGTTGGACAAGGAGGTTTTGGCCTGCTGTATC
TTGCAAATGAAGACTCTTCAGGACCTGTCACCGCTGATGCACCTTATGTCATTAAAGTGGAACCAAGTGACAACGACCCT
CTCTTCTCTGAACTGAAGTTTTACATGCGAGCTGCCAAACCTGATCTAATCGGGGCTGGGATGAAGTCAAAGAAAATAGA
GTATTTGGGAGTTCCAAAATATTGGGGTTCTGGTTTTCATGAGAAAAATGGAAAGAGGTACAGATTTATGGTGATGGATC
GATTTGGAACAGATCGACAGAAATTGTTTAAAGGAAATGGGAAGAAGTTTTCAAGGAAGCTGGTTCTTCAGCTGGGCCTT
CGACTTCTTGACATTCTGGAGTACATCCATGACCATGAATATGTGCATGCAGACATCAAAGCCTACAACGTCCTCCTGTC
CTACACCAACCCCAATCAGGTATTTTTAGTAGATTATGGACTGGCCTATAGATATGCTCCTGAGGGAGTGCCAAAGGAGT
ATAAGGAAGACCCAAAGAGGTGTCATGACGGTACCATTGAGTTCACAAGTATTGACGCACACAAAGGAGTCTCTCCTTCA
AGGCGAGCAGACCTGGAAATCATGGGCTACTGCATGATCCAGTGGTTATGTAGCCGTCTGCCCTGGGAAGACAAACTTCA
GGACCCACTCTACGTCAGAGACTCCAAGCTCAGGTGTAGAGACAATATTGATGAGTTCTTGAAAAGCTGTTTCGCTTCAG
GAAATATACCAGCTGAAATGGGAAAGTTCATGCAAGAGGTCAAGGTTCTGGGATACACAGACAGGCCAGATTACGACAAA
TTGCGAGGTATTTTGCAGCAAGGCCTAAAGTCCATAGGGTCAACAGATGACAAAAAGCTGGACTTTGGAGTGGCGACCAA
CAGCACAAGTTTGCCCTCTGTCAAGACTCCCAAGCGAAAGAAAGCAGAGGAAAAAGGCCAGTCTGCTGACGAAACCGATA
GCACCCCAGCAAAGAAGAGGCGAGCTCCTCAGAAGAAGGAAGTGAATGGGGCTAAAAAGACAGCAAGTCCTGCAAAGCGT
CCAGTGAAGAAAGAAGCTCAGGCCTCCTCTGAGCCAGCGGTGAAAAAAAGCCGAGGAAGGCCTAAGAAGAACTCT
ORF - retro_drer_17 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
98.35 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MPPKKADGVKKARAPAKRKLAEEFPSGEVLTDNAKKKWKLGSAVGQGGFGLLYLANEDSSGPVTADAPYV |
| MPPKKADGVKKARAPAKRKLAEEFPSGEVLTDNAKKKWKLGSAVGQGGFGLLYLANEDSSGPVTADAPYV |
Retrocopy | MPPKKADGVKKARAPAKRKLAEEFPSGEVLTDNAKKKWKLGSAVGQGGFGLLYLANEDSSGPVTADAPYV |
|
Parental | IKVEPSDNGPLFSELKFYMRAAKPDLIGAWMKSKKMEYLGVPKYWGSGFHEKNGKRYRFMVMDRFGTDLQ |
| IKVEPSDN.PLFSELKFYMRAAKPDLIGA.MKSKK.EYLGVPKYWGSGFHEKNGKRYRFMVMDRFGTD.Q |
Retrocopy | IKVEPSDNDPLFSELKFYMRAAKPDLIGAGMKSKKIEYLGVPKYWGSGFHEKNGKRYRFMVMDRFGTDRQ |
|
Parental | KLFEGNGKKFSRKLVLQLGLRLLDILEYIHDHEYVHADIKASNLLLSYTNPNQVFLVDYGLAYRYAPEGV |
| KLF.GNGKKFSRKLVLQLGLRLLDILEYIHDHEYVHADIKA.N.LLSYTNPNQVFLVDYGLAYRYAPEGV |
Retrocopy | KLFKGNGKKFSRKLVLQLGLRLLDILEYIHDHEYVHADIKAYNVLLSYTNPNQVFLVDYGLAYRYAPEGV |
|
Parental | PKEYKEDPKRCHDGTIEFTSIDAHKGVSPSRRADLEIMGYCMIQWLCSRLPWEDKLQDPLYVRDSKLRCR |
| PKEYKEDPKRCHDGTIEFTSIDAHKGVSPSRRADLEIMGYCMIQWLCSRLPWEDKLQDPLYVRDSKLRCR |
Retrocopy | PKEYKEDPKRCHDGTIEFTSIDAHKGVSPSRRADLEIMGYCMIQWLCSRLPWEDKLQDPLYVRDSKLRCR |
|
Parental | DNIDEFLKSCFASGNIPAEMGKFMQEVKVLGYTDRPDYDKLRGILQQGLKSIGSTDDKKLDFGVATNSTS |
| DNIDEFLKSCFASGNIPAEMGKFMQEVKVLGYTDRPDYDKLRGILQQGLKSIGSTDDKKLDFGVATNSTS |
Retrocopy | DNIDEFLKSCFASGNIPAEMGKFMQEVKVLGYTDRPDYDKLRGILQQGLKSIGSTDDKKLDFGVATNSTS |
|
Parental | LPSVKTPKRKKAEEKGQSADETDSTPAKKRRAPQKKEVNGAKKTASPAKRPVKKEAQASSEPAVKKSRGR |
| LPSVKTPKRKKAEEKGQSADETDSTPAKKRRAPQKKEVNGAKKTASPAKRPVKKEAQASSEPAVKKSRGR |
Retrocopy | LPSVKTPKRKKAEEKGQSADETDSTPAKKRRAPQKKEVNGAKKTASPAKRPVKKEAQASSEPAVKKSRGR |
|
Parental | PKKNS |
| PKKNS |
Retrocopy | PKKNS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Danio rerio was not studied using RNA-Seq expression data.
Danio rerio was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_drer_17 retrocopy.
Danio rerio was not studied using FANTOM5 data.
retro_drer_17 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_drer_17 has 0 orthologous retrocopies within teleost group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
7 retrocopies.