RetrogeneDB ID: | retro_sara_337 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_170313:10709..11237(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VRK1 | ||
Ensembl ID: | ENSSARG00000009110 | ||
Aliases: | None | ||
Description: | vaccinia related kinase 1 [Source:HGNC Symbol;Acc:12718] |
Percent Identity: | 71.2 % |
Parental protein coverage: | 52.35 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | IKASNLL-LSVKN-PDQVYLVDYGLAYRYCPEGVHKEYREDPKRCHDGTLEFTSIDAH-NGVAPSRRGDL |
IKASN.L.LS.K..P.QVYL..YGLA..YCPE..H.EY..D.K.CH.GTLEFTS.DAH..G.APSR.GDL | |
Retrocopy | IKASNFL<LSIKS<PGQVYLINYGLAHCYCPEWIHNEYNKDLKKCHNGTLEFTSMDAH<RGMAPSRCGDL |
Parental | EILGYCMIQWLSGHLPWEDNLKDPNYVRDSKIR-YREIASLMDK-CFPEKNKPGEIAKYL-ETVKFLDYA |
EIL.YC.IQWLS.HL.W.DNLKDP.YVRDSK......IASLMD..CFPEKNK.G.I.KYL.ETV..LD.. | |
Retrocopy | EILAYCIIQWLSCHLSWKDNLKDPKYVRDSKTT<IENIASLMDY<CFPEKNKSGDITKYL<ETVTLLDCV |
Parental | EKPLYQNLRDILLQGLKAIGSKDDGKLDLSVVENGGLKAKTITK |
.KPLYQNL.DILLQGLKA..SKDDGK.DLS.V..GGLKAKTITK | |
Retrocopy | *KPLYQNL*DILLQGLKATRSKDDGKPDLSIVGSGGLKAKTITK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000001772 | 1 retrocopy | |
Danio rerio | ENSDARG00000018006 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012543 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005475 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009110 | 2 retrocopies |
retro_sara_287, retro_sara_337 ,
|
Sorex araneus | ENSSARG00000011446 | 1 retrocopy |