>retro_ecab_1092
ATCAAAATCCCCCCAAACAATTCACCAACTGATGTATCCAACTTTAACTTTCAATTGTCAAATGTGAGTAAAGACAACCA
TCAAGACCATACTCAACAAACTGTCTCAGGCTATAGTCCCTCACAGCTCAGTTGGCTGCACTTGAGGCGAGATAAAATGA
CGCAGTGTAGAACAACCAATGCTTCTCAGATAACACCAGTAAGAACCCAGGCAGAAGAGGAATCCTGCAACAAATGGAAA
AAAATTGGAAAGCCATGTGGAAAGAAAAGAATGCCAATTCGGAAAGCACCTCAAGCCATTCCAGATCCAGTGCCTGAGAG
AAAAAGAACAGCGCCCCTTAACCCTGCATACACAATTCGAAAATCACGAGTTCCCAACAGTGTCCGCTTGCGGCCATATA
GGGACAGGGTGATTCACTTACTGGCATTGAAGGACTACAAGAAAACAGAACTGCTTTTTCGACTTCGGAAAGATGGTGTG
GAACAAAATGACGAGAACTCCCTTGAAAATATCCTAAACCAAGTAGCCAATCTGAATACTCAGGATTTTTCATATACCTT
AAAGGATTATGTATTTAAAGAACTCCAAAGAGACTGGCCTGGATACAGTGAACTGGACAAGCAGTCATTGGAGTTGGTGC
TTTCCCAAAGAGTAGATCCATTTCAGAATGCTACTGACATTAATCACTCAGAATCTTCTATAGGTTCTAGTACAAATGAA
ACATCATCTCCTCAGAAATGGCTTTTCAATTCTGCTGTTATTGATCCTTTAAAGAAAAAGAAAGTCAGAATATCTCACCT
GACAACTACAGTACAGTCAACATCAAACGGTCGTTTGAATAACACCAGTGAAAAATCTGCTGTTGGTCTCCCACCACTCT
CTGAAGCTCCTGCCAACCCCATCCCTCCACCATTGCCCACAGCCCGTCTTCCTGTTTCACATGCTCCTCGGCGTGTACGT
TCCAACCGCAGTTCTCGCAGCACTGCAGAAGGACCTGGAACCCCAGATCCAGATGGTGACAGTTTTAGTCAAAACAGTAG
AATCTTCGAGAGCCAGCAGGGTAAACATACTTTGAAAATGATAGCCTCGATAACAATTCCAATTAAGTATTCGAAGCTCA
TGGGGAAAAATTATTTGATGCCTGATAAGTTCAAATATGAAATTGTGAAATGCAAAGCAAAGAGCCAAGAGTACAGTATT
GAGATCACCGAGAAACAGAAAACAGATCCTGAAAGATGCGGTAAAGGTGCAAAGCTGAATTCCGGGGAAGAAGTTGAAAA
GCTTTGCACTGCCTCTGGGAAGACTTGTTCAACA
ORF - retro_ecab_1092 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
53.54 % |
Parental protein coverage: |
78.47 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | IKIPKNDPPNEVHTFNFYLSNVGKDNPQGSFDCIQQTFSSSGASQLNCLGFIQDKITVCATNDSYQMTRE |
| IKIP.N..P..V..FNF.LSNV.KDN.Q...D..QQT.S....SQL..L....DK.T.C.T....Q.T.. |
Retrocopy | IKIPPNNSPTDVSNFNFQLSNVSKDNHQ---DHTQQTVSGYSPSQLSWLHLRRDKMTQCRTTNASQITPV |
|
Parental | RMTQAEEESRNRSTKVIKPGGPYVGKRVQIRKAPQAVSDAVPERKRSTPMNPANTIRKTHGSSSVSQRPY |
| R.TQAEEES.N...K..KP.G....KR..IRKAPQA..D.VPERKR..P.NPA.TIRK.....SV..RPY |
Retrocopy | R-TQAEEESCNKWKKIGKPCGK---KRMPIRKAPQAIPDPVPERKRTAPLNPAYTIRKSRVPNSVRLRPY |
|
Parental | RDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNPKDLSYTLKDYVFKELQRDWPGYN |
| RDRVIHLLALK.YKK.ELL.RL.KDGV.Q.D.NSL..IL.QVANLN..D.SYTLKDYVFKELQRDWPGY. |
Retrocopy | RDRVIHLLALKDYKKTELLFRLRKDGVEQNDENSLENILNQVANLNTQDFSYTLKDYVFKELQRDWPGYS |
|
Parental | EIDRRSLESVLSRKLNPSQNAASTSRSESPVCSSRDTASSPQKRLLDSDFIDPLMNKKARISHLTNRVPP |
| E.D..SLE.VLS....P.QNA.....SES...SS....SSPQK.L..S..IDPL..KK.RISHLT..V.. |
Retrocopy | ELDKQSLELVLSQRVDPFQNATDINHSESSIGSSTNETSSPQKWLFNSAVIDPLKKKKVRISHLTTTVQS |
|
Parental | TLNGHLNPTSEKSATGLPPPPAAAAISTPPPPPSAHLPVSNPPQTVNSNSNSPSTPEGRGTQDLPVDSFS |
| T.NG.LN.TSEKSA.GLPP...A.A...PPP.P.A.LPVS..P..V.SN..S.ST.EG.GT.D...DSFS |
Retrocopy | TSNGRLNNTSEKSAVGLPPLSEAPANPIPPPLPTARLPVSHAPRRVRSNRSSRSTAEGPGTPDPDGDSFS |
|
Parental | QNGSVYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHREKDQIKKHDIEMIEEK |
| QN....E.QQ.K.T....L..........K..K.M..N..M...K.K....K...K.Q.....IE..E.. |
Retrocopy | QNSRIFESQQGKHT----LKMIASITIPIKYSKLMGKNYLMP-DKFKYEIVKCKAKSQ--EYSIEITEKQ |
|
Parental | EEDLKREEEIAKLNDSSPDSNEGVKEGCTAST |
| ..D..R....AKLN............G.T.ST |
Retrocopy | KTDPERCGKGAKLNSGEEVEKLCTASGKTCST |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
35 .48 RPM |
SRP021940_cerebellum |
0 .00 RPM |
6 .18 RPM |
SRP021940_embryo |
0 .00 RPM |
4 .19 RPM |
SRP021940_placental_villous |
0 .00 RPM |
13 .18 RPM |
SRP021940_synovial_membrane |
0 .00 RPM |
12 .88 RPM |
SRP021940_testis |
2 .88 RPM |
17 .39 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_1092 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_1092 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_1092 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
7 parental genes, and
7 retrocopies.