RetrogeneDB ID: | retro_ecab_178 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 1:92866332..92866824(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF3 | ||
Ensembl ID: | ENSECAG00000018741 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 3 [Source:HGNC Symbol;Acc:10785] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT |
MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT | |
Retrocopy | MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT |
Parental | LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS |
LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS | |
Retrocopy | LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS |
Parental | RERNHKPSRSFSRSRSRSRSNERK |
RERNHKPSRSFSRSRSRSRSNERK | |
Retrocopy | RERNHKPSRSFSRSRSRSRSNERK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .06 RPM | 8 .85 RPM |
SRP021940_cerebellum | 0 .21 RPM | 14 .13 RPM |
SRP021940_embryo | 0 .84 RPM | 23 .60 RPM |
SRP021940_placental_villous | 0 .19 RPM | 12 .08 RPM |
SRP021940_synovial_membrane | 0 .27 RPM | 12 .05 RPM |
SRP021940_testis | 0 .13 RPM | 16 .31 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016062 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000000421 | 9 retrocopies | |
Equus caballus | ENSECAG00000018741 | 2 retrocopies |
retro_ecab_178 , retro_ecab_961,
|
Gorilla gorilla | ENSGGOG00000017186 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000018193 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000010671 | 6 retrocopies | |
Mus musculus | ENSMUSG00000071172 | 9 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006684 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000000502 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000018106 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000001564 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014280 | 5 retrocopies |