RetrogeneDB ID: | retro_mmus_2654 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:61602566..61602902(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Srsf3 | ||
Ensembl ID: | ENSMUSG00000071172 | ||
Aliases: | Srsf3, AL024116, Sfrs3, X16 | ||
Description: | serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285] |
Percent Identity: | 64.66 % |
Parental protein coverage: | 69.51 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRG-PPPSWGRRPRDDYRRRSPPPRRRSPRRR |
..FEDP...A.AV...DGRTLCGC.VRVELSNGE..SRN...PPPS.G....D.Y.RRSPP...RSPR.. | |
Retrocopy | LKFEDP*AVATAVHKQDGRTLCGCHVRVELSNGERKSRNCD<PPPSCGYLSQDAYCRRSPPALCRSPRGG |
Parental | SFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSR-SRSRSRSNERK |
SFSRS.SRSLS..RR...SL..ERNH.PS.SFSR...S.SRSNERK | |
Retrocopy | SFSRSQSRSLS--RRTKMSLPHERNHTPSQSFSR>TQS*SRSNERK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 70 .09 RPM |
SRP007412_cerebellum | 0 .00 RPM | 64 .83 RPM |
SRP007412_heart | 0 .00 RPM | 53 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 57 .23 RPM |
SRP007412_liver | 0 .00 RPM | 20 .86 RPM |
SRP007412_testis | 0 .00 RPM | 39 .61 RPM |