RetrogeneDB ID: | retro_itri_664 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393309.1:3841798..3842232(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF3 | ||
Ensembl ID: | ENSSTOG00000014280 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 3 [Source:HGNC Symbol;Acc:10785] |
Percent Identity: | 56.08 % |
Parental protein coverage: | 89.63 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT |
MH...CPL.CKVY.GNLGNNGNKTE....FGY.G.L.SVWVA.NP.GFAFVEFE.P.....AV..LD... | |
Retrocopy | MHHFCCPLYCKVYIGNLGNNGNKTES*QVFGYFGLLKSVWVATNPAGFAFVEFEEP*GVVNAVKQLDEKA |
Parental | LCGCRVRVELSNGEKRSRNRGPPPSWGRRPR-DDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSL |
LC....RVELSN.E....N..PP...G.....D..R.R.P.P..RSPRR.S...S...SLS.D.RR.R.L | |
Retrocopy | LCTYCIRVELSNNEEKN*NHVPPATQGHQEM<DNHR-RNPLPCCRSPRRSS-TCSWNMSLSKDGRRARLL |
Parental | SRERNHKP |
S.ERN..P | |
Retrocopy | SLERNCQP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |