RetrogeneDB ID: | retro_ecab_729 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 3:81135273..81136016(+) | ||
Located in intron of: | ENSECAG00000005039 | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000012204 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHTOP | ||
Ensembl ID: | ENSECAG00000020889 | ||
Aliases: | None | ||
Description: | chromatin target of PRMT1 [Source:HGNC Symbol;Acc:24511] |
Percent Identity: | 98.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAALK |
MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAALK | |
Retrocopy | MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAALK |
Parental | LKQSLKQRLGKSNIQARLGRPIGALARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLR |
LKQSLKQRLGKSNIQARLGRP.GALARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLR | |
Retrocopy | LKQSLKQRLGKSNIQARLGRPTGALARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLR |
Parental | GGR-AVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGALARP |
GG..AVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGALARP | |
Retrocopy | GGQ<AVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGALARP |
Parental | VLTKEQLDNQLDAYMSKTKGHLDAELDAYMAQTDPETND |
VLTKEQLDNQLDAYMSKTKGHLDAELDAY.AQTDPETND | |
Retrocopy | VLTKEQLDNQLDAYMSKTKGHLDAELDAYVAQTDPETND |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .18 RPM | 24 .20 RPM |
SRP021940_cerebellum | 0 .10 RPM | 48 .30 RPM |
SRP021940_embryo | 0 .41 RPM | 53 .55 RPM |
SRP021940_placental_villous | 0 .34 RPM | 33 .82 RPM |
SRP021940_synovial_membrane | 0 .49 RPM | 32 .61 RPM |
SRP021940_testis | 1 .60 RPM | 92 .40 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013518 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000004834 | 1 retrocopy | |
Equus caballus | ENSECAG00000020889 | 1 retrocopy |
retro_ecab_729 ,
|
Loxodonta africana | ENSLAFG00000002658 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000016098 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000012760 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000010259 | 1 retrocopy |