RetrogeneDB ID: | retro_chof_6 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_395413:281..1031(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCHOG00000013640 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHTOP | ||
Ensembl ID: | ENSCHOG00000013518 | ||
Aliases: | None | ||
Description: | chromatin target of PRMT1 [Source:HGNC Symbol;Acc:24511] |
Percent Identity: | 98.9 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAALK |
MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAALK | |
Retrocopy | MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAALK |
Parental | LKQ-SLKQRLGKSNIQARLGRPIGTLARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLL |
LKQ.SLKQRLGKSNIQARLGRPIGTLARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLL | |
Retrocopy | LKQKSLKQRLGKSNIQARLGRPIGTLARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLL |
Parental | RGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGR |
RGGRA.APRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGR | |
Retrocopy | RGGRAIAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013518 | 1 retrocopy |
retro_chof_6 ,
|
Callithrix jacchus | ENSCJAG00000010383 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000004834 | 1 retrocopy | |
Equus caballus | ENSECAG00000020889 | 1 retrocopy | |
Felis catus | ENSFCAG00000002740 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002658 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000016098 | 2 retrocopies | |
Mus musculus | ENSMUSG00000001017 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000012760 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000660 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012442 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000010259 | 1 retrocopy |