RetrogeneDB ID:

retro_chof_6

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_395413:281..1031(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSCHOG00000013640
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:CHTOP
Ensembl ID:ENSCHOG00000013518
Aliases:None
Description:chromatin target of PRMT1 [Source:HGNC Symbol;Acc:24511]


Retrocopy-Parental alignment summary:






>retro_chof_6
ATGGCTGCACAGTCAGCACCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCTAAATGAGCGCTTTACTAATATGCT
GAAGAACAAACAGCCGATGCCAGTGAATATTCGAGCTTCGATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAA
GACTGGCCCAGCAGATGGAGAATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAAGAGCTTAAAGCAGCGTCTG
GGTAAGAGTAACATCCAGGCACGGTTAGGCCGACCCATAGGGACCCTGGCCAGGGGAGCAATTGGAGGACGCGGCCTGCC
CATAATCCAGAGAGGCTTACCCAGAGGAGGACTACGTGGGGGACGTGCCACAAGAACCCTTCTTAGGGGCGGGATGTCGC
TCCGAGGTCAAAACCTGCTCCGAGGTGGACGAGCCATAGCTCCCCGAATGGGCTTAAGAAGAGGTGGTGTTCGAGGTCGT
GGAGGTCCTGGGAGAGGGGGCCTAGGGCGTGGAGCTATGGGTCGTGGAGGAATCGGTGGTAGAGGTCGGGGTATGATAGG
TCGGGGAAGAGTGGGCTTTGGAGGCAGAGGCAGAGGCCGTGGCCGAGGGAGAGGTGCCCTTGCTCGCCCTGTACTGACCA
AGGAGCAGCTGGATAACCAGTTGGATGCATACATGTCGAAAACGAAAGGACACCTGGATGCAGAGTTGGATGCCTACATG
GCACAGACAGATCCTGAAACCAACGATTGA

ORF - retro_chof_6 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.9 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAALK
MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAALK
RetrocopyMAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAALK
ParentalLKQ-SLKQRLGKSNIQARLGRPIGTLARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLL
LKQ.SLKQRLGKSNIQARLGRPIGTLARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLL
RetrocopyLKQKSLKQRLGKSNIQARLGRPIGTLARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLL
ParentalRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGR
RGGRA.APRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGR
RetrocopyRGGRAIAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_6 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 18 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG00000013518 1 retrocopy
retro_chof_6 ,
Callithrix jacchus ENSCJAG000000103833 retrocopies
Dasypus novemcinctus ENSDNOG000000048341 retrocopy
Equus caballus ENSECAG000000208891 retrocopy
Felis catus ENSFCAG000000027401 retrocopy
Loxodonta africana ENSLAFG000000026583 retrocopies
Myotis lucifugus ENSMLUG000000160982 retrocopies
Mus musculus ENSMUSG000000010172 retrocopies
Rattus norvegicus ENSRNOG000000127601 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000006601 retrocopy
Tupaia belangeri ENSTBEG000000124421 retrocopy
Vicugna pacos ENSVPAG000000102591 retrocopy



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