RetrogeneDB ID:

retro_mluc_247

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429769:3516687..3517296(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000007996
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000016098
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_247
ATGGCTGCACAGTCTGCACCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCTAAATGAGTGCTTTACTAATATGCT
GAAGAACAAACAGCTGATGCCAGTGAATATTCGGGCTTCGATGCAGCAACAGCAGCAGCTAGCCACTGCCAGAAACAGAA
GACTGGCCCAGCAGATGGAAAATAGACCCTCTGTACAGGCAGCATTAAAACTTAAACAGAGCTTAAAGCAGTGCCTGGGT
AAGAGTAACATCCAGGTACGGTTAGGCCGACCCATAGGGGCCCTGGCCAGGGGAGCGATCGGAGGACGAGGCCTACCCAT
AATCCAGAGCGGCTTGCCTAGAGGAGGACTACTTGGGGGACATGCCACAAGAACCCTACTTAGGGGCGGGATGTCGCTCC
GAGGTCGGGGTATGATAGGTCGGGGAAGAGGAGGCTTTGGAGGCCGAGGCCGAGTCCGTGGACGAGGGAGAGGTGCCCTT
GCTCGCCCTGTACTGACCAAGGAACAGCTGGACAACCAATTGGATGCATACATGTCAAAAACAAAAGGACACCTGAATGC
GGAGTTGGATGCCTACATGGCACAGACAGATCCTGAAACCAATGATTAA

ORF - retro_mluc_247 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.82 %
Parental protein coverage: 67.35 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAALK
MAAQSAPKVVLKSTTKMSLNE.FTNMLKNKQ.MPVNIRASMQQQQQLA.ARNRRLAQQMENRPSVQAALK
RetrocopyMAAQSAPKVVLKSTTKMSLNECFTNMLKNKQLMPVNIRASMQQQQQLATARNRRLAQQMENRPSVQAALK
ParentalLKQKSLKQRLGKSNIQARLGRPIGTLARGAIGGRGLPLIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLL
LKQ.SLKQ.LGKSNIQ.RLGRPIG.LARGAIGGRGLP.IQ.GLPRGGL.GG.ATRTLLRGGMSLRG....
RetrocopyLKQ-SLKQCLGKSNIQVRLGRPIGALARGAIGGRGLPIIQSGLPRGGLLGGHATRTLLRGGMSLRGRGMI
ParentalRGGRAVAPRMGLRRGGVRGRGGPGR
..GR......G..RG..RGRG...R
RetrocopyGRGRGGFGGRGRVRG--RGRGALAR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_247 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 18 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000135181 retrocopy
Callithrix jacchus ENSCJAG000000103833 retrocopies
Dasypus novemcinctus ENSDNOG000000048341 retrocopy
Equus caballus ENSECAG000000208891 retrocopy
Felis catus ENSFCAG000000027401 retrocopy
Loxodonta africana ENSLAFG000000026583 retrocopies
Myotis lucifugus ENSMLUG00000016098 2 retrocopies
retro_mluc_201, retro_mluc_247 ,
Mus musculus ENSMUSG000000010172 retrocopies
Rattus norvegicus ENSRNOG000000127601 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000006601 retrocopy
Tupaia belangeri ENSTBEG000000124421 retrocopy
Vicugna pacos ENSVPAG000000102591 retrocopy



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