RetrogeneDB ID: | retro_eeur_151 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_103091:59..636(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000009626 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EPCAM | ||
Ensembl ID: | ENSEEUG00000009462 | ||
Aliases: | None | ||
Description: | epithelial cell adhesion molecule [Source:HGNC Symbol;Acc:11529] |
Percent Identity: | 51.28 % |
Parental protein coverage: | 76.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | NYKLTTNCSENDNGQCQCT-SIGTQH-TVTCSKLASKCLVMKAEMNGSKSGRR-VRP-EGAIQNNDGLYD |
..K.T........G.CQC...IG.....V.CS.L.SKCL..KA.M...K.GR..VRP.E.AI..NDGLYD | |
Retrocopy | HHKMTVCNRDGPGGLCQCA<AIGSAS<AVNCSTLTSKCLLLKARMSAPKNGRGLVRPSEHAITDNDGLYD |
Parental | PDCDEMGLFKAKQCNGTTACWCVNTAGVRRTDK-DSEIICSERVRTYWIIIELKHKARETPFEVESLKSA |
PDCD..G.FKA.QCN.T..CWCVN..GVRRTDK.D....C.E.VRTY.I.I.L.H......F....L... | |
Retrocopy | PDCDHEGRFKARQCNQTSECWCVNSVGVRRTDKGDQHLRCDELVRTYHILIDLRHRPASRAFNHSDLDAE |
Parental | LKQVITSRYQLDPKYITNIVYENDIITIDLVQNSSQKTQSDVDIADVAYYFEKDV |
L......RY.L.PK......YE...I.I.L.QN.SQK...DVDIAD.AYYFE.DV | |
Retrocopy | LRRLFRERYRLHPKFVAAVHYEQPTIQIELLQNASQKAPGDVDIADAAYYFERDV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .25 RPM |
SRP017611_kidney | 12 .75 RPM | 173 .29 RPM |
SRP017611_liver | 0 .80 RPM | 5 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006474 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013834 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000624 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011799 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009462 | 1 retrocopy |
retro_eeur_151 ,
|
Macropus eugenii | ENSMEUG00000015074 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000000151 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012390 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001077 | 1 retrocopy | |
Mus musculus | ENSMUSG00000045394 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004301 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000015680 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011902 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015667 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008429 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008631 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004235 | 2 retrocopies |