Parental gene:

TACSTD1, ENSSSCG00000008429

Aliases:EPCAM, EGP, Ep-CAM, TACSTD1
Description:Sus scrofa epithelial cell adhesion molecule (EPCAM), mRNA. [Source:RefSeq mRNA;Acc:NM_214419]
Organism:Pig (Sus scrofa)
Coordinates:3:99312714..99328503(-)


>ENSSSCG00000008429
ATGGCGCCCCCCCAGGTCCTCGCGTTCGGGCTCCTGCTCGCCGCGGCGACGGCGGCGGTGGCCGCGGCCCAACAAGGATG
TGTGTGTGAAAACTACAAACTGACCACAAACTGCTCTTTGAATGCGCTTGGTCAGTGCCAGTGTACTTCAATTGGTGCAC
AAAATTCTGTCATTTGCTCAAAATTGGCTTCCAAATGTTTGGTGATGAAGGCAGAAATGACTGGGTCAAAGGCTGGGAGA
AGACTGAAACCAGAGAATGCTATCCAGAACAACGATGGGCTCTATGATCCTGACTGTGACGAGAATGGGCTCTTCAAAGC
CAAGCAGTGTAATGGTACCTCCATGTGCTGGTGTGTGAACACTGCTGGGGTCAGAAGGACCGATAAGGACTCTGAAATAT
CCTGTTTGGAGCGAGTGAGGACCTACTGGATCATCATTGAACTAAAACACAAAACAAGAGAAAAACCTTATGATGTCACA
AGTTTGCAGAATGCACTCAAGGAGGTAATCACGGATCGTTACCAACTGGATCCCAAATATATCACAAATATTCTGTATGA
GAATGATATTATCACCATTGATCTGGTACAAAATTCTTCTCAGAAAACTCTGAATGAAGTAGACATAGCTGATGTAGCTT
ATTATTTTGAAAAAGATGTTAAAGATGAATCCTTGTTCCATTCCAAAAGGATGGACCTGAGAGTAAATGGGGAACTACTG
GATCTGGATCCTGGTCAAACTTCAATTTACTATGTTGATGAAAAACCACCTGAATTTTCAATGCAGGGTCTACAGGCTGG
TATTATTGCTGTCATTGCAGTTGTGGCGATAGCGATTGTTGCTGGCATCATTGTGCTGATTGTTTCCACGAAGAAAAGAA
GGGCAAAGTATGAGAAAGCTGAGATAAAGGAGATGGGCGAGATGCATAGGGAACTCAATGCATAA

Library Parental gene expression (RPM)
SRP014902_placenta 263 .21 RPM
SRP014902_testis 0 .57 RPM
SRP018856_adipose 0 .26 RPM
SRP018288_kidney 174 .55 RPM
SRP018288_lung 91 .03 RPM
SRP018288_liver 2 .72 RPM
SRP018288_heart 0 .10 RPM
SRP035408_liver 6 .52 RPM
SRP035408_brain 0 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006474 ortholog_one2one 1 retrogene
retro_btau_66,
Choloepus hoffmanni ENSCHOG00000013834 ortholog_one2one 1 retrogene
retro_chof_258,
Callithrix jacchus ENSCJAG00000000624 ortholog_one2one 1 retrogene
retro_cjac_3006,
Dasypus novemcinctus ENSDNOG00000011799 ortholog_one2one 1 retrogene
retro_dnov_345,
Erinaceus europaeus ENSEEUG00000009462 ortholog_one2one 1 retrogene
retro_eeur_151,
Macropus eugenii ENSMEUG00000015074 ortholog_one2one 2 retrogenes
retro_meug_1984, retro_meug_474,
Microcebus murinus ENSMICG00000000151 ortholog_one2one 1 retrogene
retro_mmur_739,
Macaca mulatta ENSMMUG00000012390 ortholog_one2one 1 retrogene
retro_mmul_34,
Monodelphis domestica ENSMODG00000001077 ortholog_one2one 1 retrogene
retro_mdom_104,
Mus musculus ENSMUSG00000045394 ortholog_one2one 1 retrogene
retro_mmus_185,
Ochotona princeps ENSOPRG00000004301 ortholog_one2one 1 retrogene
retro_opri_1225,
Pelodiscus sinensis ENSPSIG00000015680 ortholog_one2one 1 retrogene
retro_psin_22,
Pan troglodytes ENSPTRG00000011902 ortholog_one2one 1 retrogene
retro_ptro_92,
Rattus norvegicus ENSRNOG00000015667 ortholog_one2one 1 retrogene
retro_rnor_252,
Ictidomys tridecemlineatus ENSSTOG00000008631 ortholog_one2one 1 retrogene
retro_itri_106,
Tursiops truncatus ENSTTRG00000004235 ortholog_one2one 2 retrogenes
retro_ttru_21, retro_ttru_394,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_69 50.82 95.86
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Download FASTA sequences of all ENSSSCG00000008429 retrocopies