RetrogeneDB ID: | retro_meug_1984 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold76591:12502..12988(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EPCAM | ||
Ensembl ID: | ENSMEUG00000015074 | ||
Aliases: | None | ||
Description: | epithelial cell adhesion molecule [Source:HGNC Symbol;Acc:11529] |
Percent Identity: | 81.48 % |
Parental protein coverage: | 50.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | TCSQLATKCLVMKAEMTNSKSGRRKKPEGAITDNDGIYDPDCDARGLFKPRQCNGTALCWCVNTAGVRRT |
TCSQLATKCLVMKAE...S.SG.RKKPEGAITD.DG..DPDCDA..LF.PRQCNGTALCWCVNTAGVRRT | |
Retrocopy | TCSQLATKCLVMKAEVISSESGQRKKPEGAITDTDGMHDPDCDAHSLFRPRQCNGTALCWCVNTAGVRRT |
Parental | DKDSEISCSELVRTYWIIIELRHKTREKPFDNTALENH-QTGISARYQLNPKYIKQILYEDDVITIDLVQ |
.KD.EISCSELVRTY.I..ELR..TREK.F.NTALEN........RYQLNPKYIKQILYED.VITIDLVQ | |
Retrocopy | EKDGEISCSELVRTY*ITTELRDRTREKSFHNTALENALEQEFQQRYQLNPKYIKQILYEDGVITIDLVQ |
Parental | NSTQKSSNEVDIADVAYYFEKD |
NSTQKSS.EVDIADVAYYFEKD | |
Retrocopy | NSTQKSSDEVDIADVAYYFEKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006474 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013834 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000624 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011799 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009462 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015074 | 2 retrocopies |
retro_meug_1984 , retro_meug_474,
|
Microcebus murinus | ENSMICG00000000151 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012390 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001077 | 1 retrocopy | |
Mus musculus | ENSMUSG00000045394 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004301 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000015680 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011902 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015667 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008429 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008631 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004235 | 2 retrocopies |