RetrogeneDB ID: | retro_eeur_160 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_112614:411..957(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRAS | ||
Ensembl ID: | ENSEEUG00000003058 | ||
Aliases: | None | ||
Description: | Kirsten rat sarcoma viral oncogene homolog [Source:HGNC Symbol;Acc:6407] |
Percent Identity: | 85.71 % |
Parental protein coverage: | 95.74 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MTEYKLVVVGAGGVGKSALTIQLIQ-HFVDEYDPTIEDSYREQVVIDGETCLLDILDTAGQEEYSAMRDQ |
MTEYKL.VVGAGGVGK.ALTIQLIQ.HFVDEYDPTIEDSYR.QVV.DGETCLLDILDTAGQEEYSAMRDQ | |
Retrocopy | MTEYKLAVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYRKQVVRDGETCLLDILDTAGQEEYSAMRDQ |
Parental | YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP |
YMRTGE.FLCVFAINN.KSF.DI..YREQIK.VKDS.DVPMVLVGNKCDLP.RTVDTKQA..LA.SYGIP | |
Retrocopy | YMRTGEWFLCVFAINNSKSFADINLYREQIK*VKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIP |
Parental | FIETSAKTRQRVEDAFYTLVREIRQYRLKKIN-KEEKTPGCV |
FIETSAKTRQ.VEDAFYTLVREIRQYR.KK.N.....T.GC. | |
Retrocopy | FIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDDGTQGCM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 8 .06 RPM | 34 .32 RPM |
SRP017611_kidney | 11 .44 RPM | 8 .81 RPM |
SRP017611_liver | 2 .57 RPM | 13 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000011469 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003058 | 1 retrocopy |
retro_eeur_160 ,
|
Erinaceus europaeus | ENSEEUG00000010052 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000010446 | 2 retrocopies | |
Homo sapiens | ENSG00000133703 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015381 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017458 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005266 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000003830 | 2 retrocopies |