Parental gene:

RAP1A, ENSEEUG00000010446

Aliases:None
Description:RAP1A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9855]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_2631:490..14165(+)


>ENSEEUG00000010446
ACAGTTCAGTTTGTTCAGGGAATTTTTGTTGAGAAATATGACCCAACGATAGAAGATTCTTACAGAAAGCAAGTTGAAGT
AGACTGCCAACAGTGTATGCTCGAAATCCTGGACACAGCTGGAACAGAGCAATTTACAGCAATGAGGGATTTATATATGA
AGAATGGCCAAGGTTTTGCATTAGTATATTCTATTACAGCTCAGTCCACGTTTAACGACTTACAGGACCTGAGGGAACAG
ATTTTACGGGTTAAAGACACAGAAGATGTTCCAATGATTTTGGTTGGTAATAAATGTGATCTGGAAGATGAGCGAGTAGT
TGGCAAAGAACAGGGTCAGAATTTAGCAAGACAGTGGTGTAACTGTGCCTTTTTAGAATCTTCCGCAAAGTCAAAAATCA
ACGTTAATGAGATATTTTATGACTTGGTCAGACAGATAAATAGGAAAACACCAGTGGAAAAGAAGAAGCCTAAAAAGAAA
TCATGCCTGCTGCTCTAG

Library Parental gene expression (RPM)
SRP017611_liver 32 .16 RPM
SRP017611_kidney 51 .39 RPM
SRP017611_brain 31 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005384 ortholog_one2one 1 retrogene
retro_amel_1764,
Canis familiaris ENSCAFG00000013686 ortholog_one2one 1 retrogene
retro_cfam_696,
Callithrix jacchus ENSCJAG00000013392 ortholog_one2one 7 retrogenes
retro_cjac_1671, retro_cjac_2218, retro_cjac_3376, retro_cjac_3707, retro_cjac_3843, retro_cjac_3844, retro_cjac_728,
Dasypus novemcinctus ENSDNOG00000007809 ortholog_one2one 5 retrogenes
retro_dnov_101, retro_dnov_1617, retro_dnov_1764, retro_dnov_628, retro_dnov_94,
Equus caballus ENSECAG00000016434 ortholog_one2many 1 retrogene
retro_ecab_99,
Erinaceus europaeus ENSEEUG00000003058 other_paralog 1 retrogene
retro_eeur_160,
Erinaceus europaeus ENSEEUG00000010052 within_species_paralog 1 retrogene
retro_eeur_327,
Echinops telfairi ENSETEG00000016893 ortholog_one2one 2 retrogenes
retro_etel_1196, retro_etel_176,
Homo sapiens ENSG00000116473 ortholog_one2one 1 retrogene
retro_hsap_1364,
Myotis lucifugus ENSMLUG00000010571 ortholog_one2one 3 retrogenes
retro_mluc_2311, retro_mluc_2312, retro_mluc_2313,
Monodelphis domestica ENSMODG00000001323 ortholog_one2many 3 retrogenes
retro_mdom_1327, retro_mdom_139, retro_mdom_1777,
Mus musculus ENSMUSG00000068798 ortholog_one2one 2 retrogenes
retro_mmus_1963, retro_mmus_3027,
Nomascus leucogenys ENSNLEG00000004018 ortholog_one2one 1 retrogene
retro_nleu_1069,
Ochotona princeps ENSOPRG00000003999 ortholog_one2one 3 retrogenes
retro_opri_321, retro_opri_460, retro_opri_875,
Pongo abelii ENSPPYG00000001028 ortholog_one2one 1 retrogene
retro_pabe_1132,
Pan troglodytes ENSPTRG00000001102 ortholog_one2one 1 retrogene
retro_ptro_937,
Rattus norvegicus ENSRNOG00000032463 ortholog_one2one 3 retrogenes
retro_rnor_1147, retro_rnor_1494, retro_rnor_1639,
Ictidomys tridecemlineatus ENSSTOG00000027847 ortholog_one2one 1 retrogene
retro_itri_81,
Tarsius syrichta ENSTSYG00000004521 ortholog_one2one 3 retrogenes
retro_tsyr_1546, retro_tsyr_1829, retro_tsyr_2140,
Vicugna pacos ENSVPAG00000010033 ortholog_one2one 1 retrogene
retro_vpac_491,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_306 68.07 98.79
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2. retro_eeur_361 66.67 91.52
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Download FASTA sequences of all ENSEEUG00000010446 retrocopies