RetrogeneDB ID: | retro_eeur_306 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_249141:4837..5309(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1A | ||
Ensembl ID: | ENSEEUG00000010446 | ||
Aliases: | None | ||
Description: | RAP1A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9855] |
Percent Identity: | 68.07 % |
Parental protein coverage: | 98.79 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | QFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILD-TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTF |
QF.QGIFVEKYD..IED..RKQVEVD...C.L..L....G......MRDLYM.NGQGFALVYS.TAQSTF | |
Retrocopy | QFIQGIFVEKYDQMIEDF*RKQVEVD---CQLCMLE<SPGHNRNRMMRDLYMENGQGFALVYSTTAQSTF |
Parental | NDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFL-ESSAKSKINVNEIFY |
.DLQDLREQIL.VKDTEDV..ILV...CDLEDE.VVGKEQGQN..R.WCN.........KS....NE.FY | |
Retrocopy | -DLQDLREQILWVKDTEDVSLILVDIRCDLEDEQVVGKEQGQN*TRKWCNLFRI>SAKSKSNV--NEKFY |
Parental | DLVRQINRKT-PVEKKKPKKKSCLLL |
..VRQIN.KT..VEKKKPKKKSCLLL | |
Retrocopy | ETVRQIN*KT>LVEKKKPKKKSCLLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 31 .58 RPM |
SRP017611_kidney | 0 .00 RPM | 51 .39 RPM |
SRP017611_liver | 0 .00 RPM | 32 .16 RPM |