RetrogeneDB ID: | retro_eeur_374 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_274996:3693..4560(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA3 | ||
Ensembl ID: | ENSEEUG00000005430 | ||
Aliases: | None | ||
Description: | ubiquitin-like modifier activating enzyme 3 [Source:HGNC Symbol;Acc:12470] |
Percent Identity: | 78.2 % |
Parental protein coverage: | 63.3 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDVGRPKAEVAAEF |
SLQFLL.TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQ.LFRPKDVGR.KAEVAAEF | |
Retrocopy | SLQFLLETCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQYLFRPKDVGRLKAEVAAEF |
Parental | LNDRIPNCNVVPXXXXXXXXXXXXXXXFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDG |
LNDRI.NCN.VP...............FH.I.CGL.SIIARRWINGMLISLLNYED.VLDPSSIVPLID. | |
Retrocopy | LNDRISNCNIVPHFNKIQDFNDNFYQQFHLIACGLGSIIARRWINGMLISLLNYEDDVLDPSSIVPLIDW |
Parental | GTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRILQWPKEQPFGXXXXXX |
GT.GFKGN..VI.PGMTAC.ECTLELYPP.VNFPMCTIASMPRLPEHCIEYVRILQWPKEQPFG...... | |
Retrocopy | GT*GFKGND*VIQPGMTACTECTLELYPPHVNFPMCTIASMPRLPEHCIEYVRILQWPKEQPFGEGVPLD |
Parental | XXXXXXXXXXXPKSLERASQY-IRGVTYRLTQGVVKRIIPAVASTNAVIAXXXXXXXXXXXXXAYIPLNN |
............KSLERASQY.IRGVTYRLTQGVVKRIIPAVASTNAVIA.............AYIPLNN | |
Retrocopy | GDDPDHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNN |
Parental | YLVFNDVDG |
YLVFNDVDG | |
Retrocopy | YLVFNDVDG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .97 RPM | 28 .52 RPM |
SRP017611_kidney | 1 .13 RPM | 19 .69 RPM |
SRP017611_liver | 0 .16 RPM | 6 .91 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010117 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013626 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000013395 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000005430 | 2 retrocopies |
retro_eeur_374 , retro_eeur_663,
|
Otolemur garnettii | ENSOGAG00000007771 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000006221 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000011506 | 1 retrocopy |