RetrogeneDB ID: | retro_eeur_387 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_279893:3860..4078(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAGOH | ||
Ensembl ID: | ENSEEUG00000015908 | ||
Aliases: | None | ||
Description: | mago-nashi homolog, proliferation-associated (Drosophila) [Source:HGNC Symbol;Acc:6815] |
Percent Identity: | 83.78 % |
Parental protein coverage: | 83.72 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | GKF-GHEFLEFEFRPDG-KLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDR |
GKF.GH.FLEFEFRPDG.KLR.ANNSNYKNDVMIRKE...HKSVMEE.KRIIDDSEI..EDDALWPPPD. | |
Retrocopy | GKF>GHKFLEFEFRPDG>KLRNANNSNYKNDVMIRKEV*IHKSVMEEMKRIIDDSEINQEDDALWPPPD* |
Parental | VGRQ |
VG.Q | |
Retrocopy | VGQQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .13 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .00 RPM |
SRP017611_liver | 0 .00 RPM | 1 .61 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009587 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015908 | 6 retrocopies | |
Felis catus | ENSFCAG00000025232 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000012778 | 1 retrocopy | |
Sorex araneus | ENSSARG00000012081 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000003849 | 3 retrocopies |