RetrogeneDB ID: | retro_sara_150 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_4835:78497..78811(+) | ||
Located in intron of: | ENSSARG00000003319 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAGOH | ||
Ensembl ID: | ENSSARG00000012081 | ||
Aliases: | None | ||
Description: | mago-nashi homolog, proliferation-associated (Drosophila) [Source:HGNC Symbol;Acc:6815] |
Percent Identity: | 67.26 % |
Parental protein coverage: | 74.66 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | DFYLRYYVGHK-GKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKE |
DFY...Y.GHK.GKFGH...E.EF.PD.KLRY.NNSNY.ND.MIR.E.Y.HK.VM.ELKRI.DD.EITKE | |
Retrocopy | DFYPHSYIGHK<GKFGH---ELEFQPDEKLRYVNNSNYENDIMIRQETYAHKNVMVELKRITDDREITKE |
Parental | DDALWPP-PDRVGRQELEIV-IGDEHISFTTS-KIGSLIDVNQ |
.DALW.P.P.RVG.Q.L..V.IGD.HISF....KIGSLID..Q | |
Retrocopy | GDALWAP<PSRVG*QDLGSV<IGDGHISFSYK<KIGSLIDIYQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009587 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015908 | 6 retrocopies | |
Felis catus | ENSFCAG00000025232 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000012778 | 1 retrocopy | |
Sorex araneus | ENSSARG00000012081 | 2 retrocopies |
retro_sara_142, retro_sara_150 ,
|
Sus scrofa | ENSSSCG00000003849 | 3 retrocopies |