RetrogeneDB ID: | retro_fcat_1246 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:210091255..210091574(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAGOH | ||
Ensembl ID: | ENSFCAG00000025232 | ||
Aliases: | None | ||
Description: | mago-nashi homolog, proliferation-associated (Drosophila) [Source:HGNC Symbol;Acc:6815] |
Percent Identity: | 71.03 % |
Parental protein coverage: | 72.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRK-EAYVHKSVMEELKRIIDDSEI |
MESD.YL.YYVGHKGKF..EFL...F.PD.KLR.ANNSNY.NDV.IRK.EAYVHK.V...L.RII.D.E. | |
Retrocopy | MESDLYLCYYVGHKGKFDQEFLQLWFLPDRKLRCANNSNYTNDVTIRK>EAYVHKCVIRQLRRIINDNEK |
Parental | TKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGS |
..EDDALWPP.DRV..QELEIVI..EH.S.TTSK.GS | |
Retrocopy | A*EDDALWPPADRVRWQELEIVIANEHVSLTTSKMGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 4 .71 RPM |
SRP017611_kidney | 0 .31 RPM | 9 .17 RPM |
SRP017611_liver | 0 .00 RPM | 5 .36 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009587 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015908 | 6 retrocopies | |
Felis catus | ENSFCAG00000025232 | 2 retrocopies |
retro_fcat_1246 , retro_fcat_980,
|
Rattus norvegicus | ENSRNOG00000012778 | 1 retrocopy | |
Sorex araneus | ENSSARG00000012081 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000003849 | 3 retrocopies |