RetrogeneDB ID: | retro_eeur_416 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_292433:302..910(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PLEKHA3 | ||
Ensembl ID: | ENSEEUG00000004169 | ||
Aliases: | None | ||
Description: | pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3 [Source:HGNC Symbol;Acc:14338] |
Percent Identity: | 83.5 % |
Parental protein coverage: | 82.86 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LTDTRTKG-KEINETSESLKTKMSELRLYCDLLMQQVHTIQEFVHHDENHSPPSIENMNEASSLLSATCN |
L.DTRTK..KEINETSESLKTKMSELRLYCDLLMQQVHTIQ.FVHH..N.SPP.IENMNEAS.LLSATC. | |
Retrocopy | LIDTRTKKEKEINETSESLKTKMSELRLYCDLLMQQVHTIQVFVHHNKNNSPPRIENMNEASFLLSATCD |
Parental | TFITTLEECVKIANAKFKPEM-FQLTHPDPLVSPVSPSPVQMMKRSVSHPGSCSSERTSHPMKEPVPTFY |
TFITT.EECVKIAN.KFKPEM.FQLTH.D.L.S.VSPSPVQMMKRSVSHPGSCSSERTSHPMKEPVPTFY | |
Retrocopy | TFITTFEECVKIANVKFKPEM>FQLTHQDLLLSHVSPSPVQMMKRSVSHPGSCSSERTSHPMKEPVPTFY |
Parental | RFSQRRRRTYSDTDTCNDIPLEDPDRPVHCSRSTLNGDLAPVTIPEE-SKLTAKKTSESEDLLPSF |
RFSQR.RRT..D..TCNDIPLEDP..PV.CSRS.LNGDLA..TIPEE.S.L.AK..SES.DLLPSF | |
Retrocopy | RFSQRHRRT--DMHTCNDIPLEDPNQPVYCSRSPLNGDLASETIPEE>SRLMAKRKSESKDLLPSF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .61 RPM | 46 .57 RPM |
SRP017611_kidney | 1 .13 RPM | 27 .01 RPM |
SRP017611_liver | 0 .00 RPM | 5 .31 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013997 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000003906 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002717 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000004169 | 1 retrocopy |
retro_eeur_416 ,
|
Homo sapiens | ENSG00000116095 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015317 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000009898 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005823 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005495 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002724 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007550 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000005341 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009729 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000003490 | 3 retrocopies |