Parental gene:

PLEKHA3, ENSEEUG00000004169

Aliases:None
Description:pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3 [Source:HGNC Symbol;Acc:14338]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_2610:668..17133(+)


>ENSEEUG00000004169
CACTCAGCAGACAACACAAGGCTGGAACTAATCATCCCAGGAGAGCAGCATTTCTACATGAGGGCAGTGAATGCAGCCGA
GAGACAGAGGTGGCTGGCTCTGGGCAGCTCCAAGGCCTGTTTGACTGATACTAGGACTAAAGGAAAAGAAATAAATGAAA
CTAGTGAATCTTTGAAAACCAAAATGTCTGAACTTCGTCTCTACTGTGACCTCTTAATGCAGCAAGTTCATACAATCCAA
GAGTTTGTTCACCATGACGAGAATCATTCACCTCCCAGCATAGAGAACATGAATGAAGCCTCTTCTCTGCTGAGTGCCAC
ATGTAATACCTTCATCACAACCCTCGAGGAGTGTGTGAAGATAGCAAACGCCAAGTTTAAGCCCGAGATGTTTCAGCTCA
CCCATCCAGATCCCCTAGTTTCTCCCGTGTCACCTTCTCCTGTCCAAATGATGAAGCGTTCTGTCAGTCACCCTGGTTCT
TGCAGTTCAGAGAGGACTAGTCACCCTATGAAAGAACCAGTGCCTACATTTTACCGGTTCTCACAGAGACGCCGAAGAAC
CTACTCAGACACAGACACCTGTAATGATATTCCTCTTGAAGATCCAGATCGACCTGTTCACTGTTCAAGAAGTACACTCA
ATGGAGATTTGGCACCAGTGACCATTCCTGAAGAAAGCAAACTTACGGCCAAAAAAACATCTGAATCAGAAGATCTTCTT
CCATCCTTCCCTTCCTAA

Library Parental gene expression (RPM)
SRP017611_liver 5 .31 RPM
SRP017611_kidney 27 .01 RPM
SRP017611_brain 46 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013997 ortholog_one2one 5 retrogenes
retro_chof_1366, retro_chof_1559, retro_chof_300, retro_chof_736, retro_chof_985,
Cavia porcellus ENSCPOG00000003906 ortholog_one2one 1 retrogene
retro_cpor_487,
Dasypus novemcinctus ENSDNOG00000002717 ortholog_one2one 1 retrogene
retro_dnov_107,
Homo sapiens ENSG00000116095 ortholog_one2one 1 retrogene
retro_hsap_2060,
Macropus eugenii ENSMEUG00000015317 ortholog_one2one 2 retrogenes
retro_meug_1530, retro_meug_341,
Microcebus murinus ENSMICG00000009898 ortholog_one2one 1 retrogene
retro_mmur_617,
Myotis lucifugus ENSMLUG00000005823 ortholog_one2one 2 retrogenes
retro_mluc_1031, retro_mluc_689,
Oryctolagus cuniculus ENSOCUG00000005495 ortholog_one2one 1 retrogene
retro_ocun_1273,
Otolemur garnettii ENSOGAG00000002724 ortholog_one2one 1 retrogene
retro_ogar_1845,
Tupaia belangeri ENSTBEG00000007550 ortholog_one2one 3 retrogenes
retro_tbel_4186, retro_tbel_4555, retro_tbel_4723,
Tarsius syrichta ENSTSYG00000005341 ortholog_one2one 1 retrogene
retro_tsyr_869,
Tursiops truncatus ENSTTRG00000009729 ortholog_one2one 2 retrogenes
retro_ttru_1296, retro_ttru_1497,
Vicugna pacos ENSVPAG00000003490 ortholog_one2one 3 retrogenes
retro_vpac_487, retro_vpac_578, retro_vpac_619,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_416 83.50 82.86
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Download FASTA sequences of all ENSEEUG00000004169 retrocopies