RetrogeneDB ID: | retro_eeur_544 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_342038:4032..4424(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TOMM20 | ||
Ensembl ID: | ENSEEUG00000000221 | ||
Aliases: | None | ||
Description: | translocase of outer mitochondrial membrane 20 homolog (yeast) [Source:HGNC Symbol;Acc:20947] |
Percent Identity: | 74.24 % |
Parental protein coverage: | 88.28 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | IGYCIYFDRKRRSDPNFKN---RLRERRKKQKLAKERAGLSKLPDLK-DAEAVQKFFLEEIQLGEELLAQ |
I.Y.IYFD.KRRSD.N.KN...R.RE.RKKQKLAK.RAGL.KLPDLK.DAE..QKFFLEEIQLGEELL.Q | |
Retrocopy | IWYFIYFDHKRRSDSNLKNIMHRVRELRKKQKLAKKRAGLFKLPDLK<DAETLQKFFLEEIQLGEELLTQ |
Parental | GEYEKGVDHLTNAIAVCGQPQRLLQVLQRTLPPPVFQMLLTKLSTISQKIVSAQSLAEDDVE |
.EY.KGV.HLTNAIA.CG.PQ.LL.VLQ.TLP.PVFQMLLTKL.TI.Q.IVSA...A.DD.. | |
Retrocopy | DEYVKGVGHLTNAIAMCG*PQQLLKVLQQTLPLPVFQMLLTKLLTIIQRIVSAWNMAVDDMK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 110 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 95 .27 RPM |
SRP017611_liver | 0 .00 RPM | 45 .02 RPM |