RetrogeneDB ID: | retro_ocun_1495 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 9:7770940..7771375(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000009170 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TOMM20 | ||
Ensembl ID: | ENSOCUG00000021470 | ||
Aliases: | None | ||
Description: | translocase of outer mitochondrial membrane 20 homolog (yeast) [Source:HGNC Symbol;Acc:20947] |
Percent Identity: | 98.62 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFF |
MVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFF | |
Retrocopy | MVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFF |
Parental | LEEIQLGEELLAQGEYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLA |
LEEIQLGEELLAQGEYEKGVDHLTNAIAVCGQPQQLLQVLQQTLP.PVFQML.TKLPTISQRIVSAQSLA | |
Retrocopy | LEEIQLGEELLAQGEYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPLPVFQMLRTKLPTISQRIVSAQSLA |
Parental | EDDVE |
EDDVE | |
Retrocopy | EDDVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 51 .71 RPM |
SRP017611_kidney | 1 .82 RPM | 37 .70 RPM |
SRP017611_liver | 0 .15 RPM | 13 .03 RPM |