RetrogeneDB ID:

retro_ttru_1114

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_103771:93374..93629(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TOMM20
Ensembl ID:ENSTTRG00000002200
Aliases:None
Description:translocase of outer mitochondrial membrane 20 homolog (yeast) [Source:HGNC Symbol;Acc:20947]


Retrocopy-Parental alignment summary:






>retro_ttru_1114
GCCGTTTCCATCGGGTACTGCATTTACTTCGACCGCAAGAGACGGAGTGACCCCAATTTCAAGAACAGAGTGCGAGAACG
AGGAAAGAAACAGAAGCTTGCCAAGGAGAGAGCTGGACTTTCCAAATTACCTGACCTTAAAGATGCTGAAGGCGTTCAGA
AATTCTTCCTCGAAGAAATACAGCTTGGTGAAGAGTTACTAGCTCAAGGTGAATATGAGAAGGGTGTGGACCATCTGACA
AATGCAATTGCTGTG

ORF - retro_ttru_1114 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 92.94 %
Parental protein coverage: 58.62 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalALFIGYCIYFDRKRRSDPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQG
A..IGYCIYFDRKRRSDPNFKNR.RER.KKQKLAKERAGLSKLPDLKDAE.VQKFFLEEIQLGEELLAQG
RetrocopyAVSIGYCIYFDRKRRSDPNFKNRVRERGKKQKLAKERAGLSKLPDLKDAEGVQKFFLEEIQLGEELLAQG
ParentalEYENGVDHLTNAIAV
EYE.GVDHLTNAIAV
RetrocopyEYEKGVDHLTNAIAV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1114 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1114 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 73 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000005625 retrocopies
Erinaceus europaeus ENSEEUG000000002211 retrocopy
Myotis lucifugus ENSMLUG000000162181 retrocopy
Macaca mulatta ENSMMUG000000071362 retrocopies
Monodelphis domestica ENSMODG000000084526 retrocopies
Mus musculus ENSMUSG0000009390412 retrocopies
Oryctolagus cuniculus ENSOCUG000000214702 retrocopies
Otolemur garnettii ENSOGAG000000326932 retrocopies
Pteropus vampyrus ENSPVAG000000151571 retrocopy
Rattus norvegicus ENSRNOG000000199804 retrocopies
Sarcophilus harrisii ENSSHAG000000158763 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000275643 retrocopies
Tupaia belangeri ENSTBEG0000000382726 retrocopies
Tursiops truncatus ENSTTRG00000002200 4 retrocopies
Vicugna pacos ENSVPAG000000039801 retrocopy



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